Comparative annotation of functional regions in the human genome using epigenomic data
Published 2013 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Comparative annotation of functional regions in the human genome using epigenomic data
Authors
Keywords
-
Journal
NUCLEIC ACIDS RESEARCH
Volume 41, Issue 8, Pages 4423-4432
Publisher
Oxford University Press (OUP)
Online
2013-03-13
DOI
10.1093/nar/gkt143
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- A hidden Markov model to identify combinatorial epigenetic regulation patterns for estrogen receptor α target genes
- (2012) Russell Bonneville et al. BIOINFORMATICS
- The RNA Pol II Elongation Factor Ell3 Marks Enhancers in ES Cells and Primes Future Gene Activation
- (2012) Chengqi Lin et al. CELL
- Dynamic Changes in Nucleosome Occupancy Are Not Predictive of Gene Expression Dynamics but Are Linked to Transcription and Chromatin Regulators
- (2012) D. J. Huebert et al. MOLECULAR AND CELLULAR BIOLOGY
- Unsupervised pattern discovery in human chromatin structure through genomic segmentation
- (2012) Michael M Hoffman et al. NATURE METHODS
- Integrative annotation of chromatin elements from ENCODE data
- (2012) Michael M. Hoffman et al. NUCLEIC ACIDS RESEARCH
- Modeling gene expression using chromatin features in various cellular contexts
- (2012) Xianjun Dong et al. GENOME BIOLOGY
- A Rapid, Extensive, and Transient Transcriptional Response to Estrogen Signaling in Breast Cancer Cells
- (2011) Nasun Hah et al. CELL
- Mapping and analysis of chromatin state dynamics in nine human cell types
- (2011) Jason Ernst et al. NATURE
- Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA
- (2011) Dong Wang et al. NATURE
- Modeling the relative relationship of transcription factor binding and histone modifications to gene expression levels in mouse embryonic stem cells
- (2011) Chao Cheng et al. NUCLEIC ACIDS RESEARCH
- Discover regulatory DNA elements using chromatin signatures and artificial neural network
- (2010) Hiram A. Firpi et al. BIOINFORMATICS
- HPeak: an HMM-based algorithm for defining read-enriched regions in ChIP-Seq data
- (2010) Zhaohui S Qin et al. BMC BIOINFORMATICS
- Systematic Protein Location Mapping Reveals Five Principal Chromatin Types in Drosophila Cells
- (2010) Guillaume J. Filion et al. CELL
- Epigenetic Priming of a Pre-B Cell-Specific Enhancer through Binding of Sox2 and Foxd3 at the ESC Stage
- (2010) Daniel Liber et al. Cell Stem Cell
- Distinct Epigenomic Landscapes of Pluripotent and Lineage-Committed Human Cells
- (2010) R. David Hawkins et al. Cell Stem Cell
- Epigenome Mapping in Normal and Disease States
- (2010) Alika K. Maunakea et al. CIRCULATION RESEARCH
- Integrating multiple evidence sources to predict transcription factor binding in the human genome
- (2010) J. Ernst et al. GENOME RESEARCH
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
- (2010) Peter V. Kharchenko et al. NATURE
- Discovery and characterization of chromatin states for systematic annotation of the human genome
- (2010) Jason Ernst et al. NATURE BIOTECHNOLOGY
- The NIH Roadmap Epigenomics Mapping Consortium
- (2010) Bradley E Bernstein et al. NATURE BIOTECHNOLOGY
- Nucleosome dynamics define transcriptional enhancers
- (2010) Housheng Hansen He et al. NATURE GENETICS
- Transposable elements have rewired the core regulatory network of human embryonic stem cells
- (2010) Galih Kunarso et al. NATURE GENETICS
- Annotating non-coding regions of the genome
- (2010) Roger P. Alexander et al. NATURE REVIEWS GENETICS
- Histone modification levels are predictive for gene expression
- (2010) R. Karlic et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome-wide prediction of transcription factor binding sites using an integrated model
- (2010) Kyoung-Jae Won et al. GENOME BIOLOGY
- Predictive chromatin signatures in the mammalian genome
- (2009) G. C. Hon et al. HUMAN MOLECULAR GENETICS
- Histone modifications at human enhancers reflect global cell-type-specific gene expression
- (2009) Nathaniel D. Heintzman et al. NATURE
- Computation for ChIP-seq and RNA-seq studies
- (2009) Shirley Pepke et al. NATURE METHODS
- Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
- (2009) Da Wei Huang et al. Nature Protocols
- ChIP–seq: advantages and challenges of a maturing technology
- (2009) Peter J. Park NATURE REVIEWS GENETICS
- The Universal Protein Resource (UniProt) in 2010
- (2009) NUCLEIC ACIDS RESEARCH
- Diversity and Complexity in DNA Recognition by Transcription Factors
- (2009) G. Badis et al. SCIENCE
- Prediction of regulatory elements in mammalian genomes using chromatin signatures
- (2008) Kyoung-Jae Won et al. BMC BIOINFORMATICS
- Genome-wide approaches to studying chromatin modifications
- (2008) Dustin E. Schones et al. NATURE REVIEWS GENETICS
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started