Robustness of a model microbial community emerges from population structure among single cells of a clonal population

Annual community patterns are driven by seasonal switching between closely related marine bacteria

(2017) Christopher S Ward et al.   ISME Journal

Mechanism for microbial population collapse in a fluctuating resource environment

(2017) Serdar Turkarslan et al.   Molecular Systems Biology

Noise Facilitates Transcriptional Control under Dynamic Inputs

(2015) Ryan A. Kellogg et al.   CELL

A method to analyze, sort, and retain viability of obligate anaerobic microorganisms from complex microbial communities

(2015) Anne W. Thompson et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells

(2015) Florian Buettner et al.   NATURE BIOTECHNOLOGY

Marine microbial community dynamics and their ecological interpretation

(2015) Jed A. Fuhrman et al.   NATURE REVIEWS MICROBIOLOGY

Integrating Ecological and Engineering Concepts of Resilience in Microbial Communities

(2015) Hyun-Seob Song et al.   Frontiers in Microbiology

Beanplot: A Boxplot Alternative for Visual Comparison of Distributions

(2015) Peter Kampstra   Journal of Statistical Software

Erosion of functional independence early in the evolution of a microbial mutualism

(2014) K. L. Hillesland et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-cell analysis reveals gene-expression heterogeneity in syntrophic dual-culture of Desulfovibrio vulgaris with Methanosarcina barkeri

(2014) Zhenhua Qi et al.   Scientific Reports

Rapid Transposon Liquid Enrichment Sequencing (TnLE-seq) for Gene Fitness Evaluation in Underdeveloped Bacterial Systems

(2013) Samuel R. Fels et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial heterogeneity affects bioprocess robustness: Dynamic single-cell analysis contributes to understanding of microbial populations

(2013) Frank Delvigne et al.   Biotechnology Journal

Bacterial Adaptation through Loss of Function

(2013) Alison K. Hottes et al.   PLoS Genetics

RT-qPCR work-flow for single-cell data analysis

(2012) Anders Ståhlberg et al.   METHODS

Generic Indicators for Loss of Resilience Before a Tipping Point Leading to Population Collapse

(2012) L. Dai et al.   SCIENCE

Knockout and pullout recombineering for naturally transformable Burkholderia thailandensis and Burkholderia pseudomallei

(2011) Yun Kang et al.   Nature Protocols

Evolutionary dynamics of bacteria in a human host environment

(2011) L. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolic Flexibility of Sulfate-Reducing Bacteria

(2011) Caroline M. Plugge et al.   Frontiers in Microbiology

Microorganisms with Novel Dissimilatory (Bi)Sulfite Reductase Genes Are Widespread and Part of the Core Microbiota in Low-Sulfate Peatlands

(2010) Doris Steger et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Population robustness arising from cellular heterogeneity

(2010) P. Paszek et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid evolution of stability and productivity at the origin of a microbial mutualism

(2010) K. L. Hillesland et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

(2010) Y. Taniguchi et al.   SCIENCE

ASYMMETRIC, BIMODAL TRADE-OFFS DURING ADAPTATION OFMETHYLOBACTERIUMTO DISTINCT GROWTH SUBSTRATES

(2009) Ming-Chun Lee et al.   EVOLUTION

The Electron Transfer System of Syntrophically Grown Desulfovibrio vulgaris

(2009) C. B. Walker et al.   JOURNAL OF BACTERIOLOGY

Whole Genome Amplification and De novo Assembly of Single Bacterial Cells

(2009) Sébastien Rodrigue et al.   PLoS One

Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli

(2008) Z. D. Blount et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA