Rapid Transposon Liquid Enrichment Sequencing (TnLE-seq) for Gene Fitness Evaluation in Underdeveloped Bacterial Systems

Transposon insertion sequencing: a new tool for systems-level analysis of microorganisms

(2013) Tim van Opijnen et al.   NATURE REVIEWS MICROBIOLOGY

A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium

(2013) Lars Barquist et al.   NUCLEIC ACIDS RESEARCH

Microbial Community Succession during Lactate Amendment and Electron Acceptor Limitation Reveals a Predominance of Metal-Reducing Pelosinus spp.

(2012) Jennifer J. Mosher et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Functionality of the TOL plasmid under varying environmental conditions following conjugal transfer

(2012) Kaoru Ikuma et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Generalized Schemes for High-Throughput Manipulation of the Desulfovibrio vulgaris Genome

(2011) S. R. Chhabra et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

(2011) T. Carver et al.   BIOINFORMATICS

Evidence-Based Annotation of Transcripts and Proteins in the Sulfate-Reducing Bacterium Desulfovibrio vulgaris Hildenborough

(2011) M. N. Price et al.   JOURNAL OF BACTERIOLOGY

Linear plasmids mobilize linear but not circular chromosomes in Streptomyces: support for the 'end first' model of conjugal transfer

(2011) H.-H. Lee et al.   MICROBIOLOGY-SGM

The essential genome of a bacterium

(2011) B. Christen et al.   Molecular Systems Biology

Identifying microbial fitness determinants by insertion sequencing using genome-wide transposon mutant libraries

(2011) Andrew L Goodman et al.   Nature Protocols

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

(2011) Martin Kircher et al.   NUCLEIC ACIDS RESEARCH

The RND-family transporter, HpnN, is required for hopanoid localization to the outer membrane of Rhodopseudomonas palustris TIE-1

(2011) D. M. Doughty et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evidence-Based Annotation of Gene Function in Shewanella oneidensis MR-1 Using Genome-Wide Fitness Profiling across 121 Conditions

(2011) Adam Deutschbauer et al.   PLoS Genetics

Effect of the Deletion of qmoABC and the Promoter-Distal Gene Encoding a Hypothetical Protein on Sulfate Reduction in Desulfovibrio vulgaris Hildenborough

(2010) G. M. Zane et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Development of an intergeneric conjugal transfer system for rimocidin-producingStreptomyces rimosus

(2010) S. Phornphisutthimas et al.   LETTERS IN APPLIED MICROBIOLOGY

A universal TagModule collection for parallel genetic analysis of microorganisms

(2010) Julia Oh et al.   NUCLEIC ACIDS RESEARCH

Development of a Markerless Genetic Exchange System for Desulfovibrio vulgaris Hildenborough and Its Use in Generating a Strain with Increased Transformation Efficiency

(2009) K. L. Keller et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Identifying Genetic Determinants Needed to Establish a Human Gut Symbiont in Its Habitat

(2009) Andrew L. Goodman et al.   Cell Host & Microbe

Contribution of mobile genetic elements toDesulfovibrio vulgarisgenome plasticity

(2009) Christopher B. Walker et al.   ENVIRONMENTAL MICROBIOLOGY

Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants

(2009) G. C. Langridge et al.   GENOME RESEARCH

Tn-seq: high-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms

(2009) Tim van Opijnen et al.   NATURE METHODS

Tracking insertion mutants within libraries by deep sequencing and a genome-wide screen for Haemophilus genes required in the lung

(2009) J. D. Gawronski et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Large-scale filter mating assay for intra- and inter-specific conjugal transfer of the promiscuous plasmid pMV158 in Gram-positive bacteria

(2008) Fabián Lorenzo-Díaz et al.   PLASMID