Methylphosphonate metabolism by Pseudomonas sp. populations contributes to the methane oversaturation paradox in an oxic freshwater lake

Freshwater Bacteria Release Methane as a By-Product of Phosphorus Acquisition

(2016) Mengyin Yao et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Methane ebullition and diffusion from northern ponds and lakes regulated by the interaction between temperature and system productivity

(2016) Tonya DelSontro et al.   LIMNOLOGY AND OCEANOGRAPHY

Marine methane paradox explained by bacterial degradation of dissolved organic matter

(2016) Daniel J. Repeta et al.   Nature Geoscience

Geochemistry and Mixing Drive the Spatial Distribution of Free-Living Archaea and Bacteria in Yellowstone Lake

(2016) Jinjun Kan et al.   Frontiers in Microbiology

Methane Production in Oxic Lake Waters Potentially Increases Aquatic Methane Flux to Air

(2016) Kam W. Tang et al.   Environmental Science & Technology Letters

Surveys, simulation and single-cell assays relate function and phylogeny in a lake ecosystem

(2016) Sarah P. Preheim et al.   Nature Microbiology

Landscape Position Influences Microbial Composition and Function via Redistribution of Soil Water across a Watershed

(2015) Zhe Du et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Discovery of phosphonic acid natural products by mining the genomes of 10,000 actinomycetes

(2015) Kou-San Ju et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Methane excess in Arctic surface water- triggered by sea ice formation and melting

(2015) E. Damm et al.   Scientific Reports

Aerobic production of methane from dissolved water-column methylphosphonate and sinking particles in the North Pacific Subtropical Gyre

(2014) DA del Valle et al.   AQUATIC MICROBIAL ECOLOGY

In Situ Measurement of Dissolved Methane and Carbon Dioxide in Freshwater Ecosystems by Off-Axis Integrated Cavity Output Spectroscopy

(2014) Rodrigo Gonzalez-Valencia et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Paradox reconsidered: Methane oversaturation in well-oxygenated lake waters

(2014) Kam W. Tang et al.   LIMNOLOGY AND OCEANOGRAPHY

Methane production by phosphate-starved SAR11 chemoheterotrophic marine bacteria

(2014) Paul Carini et al.   Nature Communications

Oxic water column methanogenesis as a major component of aquatic CH4 fluxes

(2014) Matthew J Bogard et al.   Nature Communications

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

Taxonomic evaluation of the genus Enterobacter based on multilocus sequence analysis (MLSA): Proposal to reclassify E. nimipressuralis and E. amnigenus into Lelliottia gen. nov. as Lelliottia nimipressuralis comb. nov. and Lelliottia amnigena comb. nov., respectively, E. gergoviae and E. pyrinus into Pluralibacter gen. nov. as Pluralibacter gergoviae comb. nov. and Pluralibacter pyrinus comb. nov., respectively, E. cowanii, E. radicincitans, E. oryzae and E. arachidis into Kosakonia gen. nov. as Kosakonia cowanii comb. nov., Kosakonia radicincitans comb. nov., Kosakonia oryzae comb. nov. and Kosakonia arachidis comb. nov., respectively, and E. turicensis, E. helveticus and E. pulveris into Cronobacter as Cronobacter zurichensis nom. nov., Cronobacter helveticus comb. nov. and Cronobacter pulveris comb. nov., respectively, and emended description of the genera Enterobacter and Cronobacter

(2013) Carrie Brady et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Identification of putative methylotrophic and hydrogenotrophic methanogens within sedimenting material and copepod faecal pellets

(2012) AK Ditchfield et al.   AQUATIC MICROBIAL ECOLOGY

Coupling Automated Radon and Carbon Dioxide Measurements in Coastal Waters

(2012) Isaac R. Santos et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Nutrient requirements for growth of the extreme oligotroph ‘Candidatus Pelagibacter ubique’ HTCC1062 on a defined medium

(2012) Paul Carini et al.   ISME Journal

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Synthesis of Methylphosphonic Acid by Marine Microbes: A Source for Methane in the Aerobic Ocean

(2012) W. W. Metcalf et al.   SCIENCE

Distribution of glyphosate and methylphosphonate catabolism systems in soil bacteria Ochrobactrum anthropi and Achromobacter sp

(2011) Alexey V. Sviridov et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Yellowstone Lake: high-energy geochemistry and rich bacterial diversity

(2011) Scott Clingenpeel et al.   ENVIRONMENTAL MICROBIOLOGY

Archaea in Yellowstone Lake

(2011) Jinjun Kan et al.   ISME Journal

A Guide to the Natural History of Freshwater Lake Bacteria

(2011) R. J. Newton et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Microbial methane production in oxygenated water column of an oligotrophic lake

(2011) H.-P. Grossart et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Freshwater Methane Emissions Offset the Continental Carbon Sink

(2011) D. Bastviken et al.   SCIENCE

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A microbial source of phosphonates in oligotrophic marine systems

(2009) Sonya T. Dyhrman et al.   Nature Geoscience

Carbon isotopic characterization for the origin of excess methane in subsurface seawater

(2008) Motoki Sasakawa et al.   JOURNAL OF GEOPHYSICAL RESEARCH

Aerobic production of methane in the sea

(2008) David M. Karl et al.   Nature Geoscience