QTL analysis of soft scald in two apple populations

Genome to Phenome Mapping in Apple Using Historical Data

(2016) Zoë Migicovsky et al.   Plant Genome

Discovery and mapping of genomic regions governing economically important traits of Basmati rice

(2015) Lakshminarayana R Vemireddy et al.   BMC PLANT BIOLOGY

Precise identification of two wheat–Thinopyrum intermedium substitutions reveals the compensation and rearrangement between wheat and Thinopyrum chromosomes

(2015) Guangrong Li et al.   MOLECULAR BREEDING

Identification and validation of a QTL influencing bitter pit symptoms in apple (Malus × domestica)

(2015) M. Buti et al.   MOLECULAR BREEDING

Apple fruit texture QTLs: year and cold storage effects on sensory and instrumental traits

(2015) Inès Ben Sadok et al.   Tree Genetics & Genomes

Two quantitative trait loci, Dw1 and Dw2, are primarily responsible for rootstock-induced dwarfing in apple

(2015) Toshi M Foster et al.   Horticulture Research

Determination of optimal harvest boundaries for Honeycrisp™ fruit using a new chlorophyll meter

(2014) John DeLong et al.   CANADIAN JOURNAL OF PLANT SCIENCE

TheAAT1locus is critical for the biosynthesis of esters contributing to ‘ripe apple’ flavour in ‘Royal Gala’ and ‘Granny Smith’ apples

(2014) Edwige J. F. Souleyre et al.   PLANT JOURNAL

Bayesian QTL analyses using pedigreed families of an outcrossing species, with application to fruit firmness in apple

(2014) M. C. A. M. Bink et al.   THEORETICAL AND APPLIED GENETICS

Fast and Cost-Effective Genetic Mapping in Apple Using Next-Generation Sequencing

(2014) K. M. Gardner et al.   G3-Genes Genomes Genetics

Genetic and environmental control of fruit maturation, dry matter and firmness in apple (Malus × domestica Borkh.)

(2014) David Chagné et al.   Horticulture Research

Identification of Quantitative Trait Loci (QTLs) for Fruit Quality Traits in Apple

(2013) Sarah M. Potts et al.   PLANT MOLECULAR BIOLOGY REPORTER

An Improved Genotyping by Sequencing (GBS) Approach Offering Increased Versatility and Efficiency of SNP Discovery and Genotyping

(2013) Humira Sonah et al.   PLoS One

Advances in QTL mapping for ethylene production in apple (Malus×domestica Borkh.)

(2013) Fabrizio Costa et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Identification of lipoxygenase (LOX) genes putatively involved in fruit flavour formation in apple (Malus × domestica)

(2013) Jörg Vogt et al.   Tree Genetics & Genomes

Improving fruit and wine: what does genomics have to offer?

(2013) Sean Myles   TRENDS IN GENETICS

Putative resistance gene markers associated with quantitative trait loci for fire blight resistance in Malus ‘Robusta 5’ accessions

(2012) Susan E Gardiner et al.   BMC GENETICS

Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes

(2012) Samuel O Oyola et al.   BMC GENOMICS

Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array

(2012) Laima Antanaviciute et al.   BMC GENOMICS

QTL and candidate gene mapping for polyphenolic composition in apple fruit

(2012) David Chagné et al.   BMC PLANT BIOLOGY

A genomics approach to understanding the role of auxin in apple (Malus x domestica) fruit size control

(2012) Fanny Devoghalaere et al.   BMC PLANT BIOLOGY

A Multi-Population Consensus Genetic Map Reveals Inconsistent Marker Order among Maps Likely Attributed to Structural Variations in the Apple Genome

(2012) Muhammad Awais Khan et al.   PLoS One

Apple, from genome to breeding

(2012) M. Troggio et al.   Tree Genetics & Genomes

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Towards genomic selection in apple (Malus × domestica Borkh.) breeding programmes: Prospects, challenges and strategies

(2011) Satish Kumar et al.   Tree Genetics & Genomes

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The genome of the domesticated apple (Malus × domestica Borkh.)

(2010) Riccardo Velasco et al.   NATURE GENETICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Identification and stability of QTLs for fruit quality traits in apple

(2008) Katrien Kenis et al.   Tree Genetics & Genomes