RNA Fluorescence with Light-Up Aptamers

Light-up and FRET aptamer reporters; evaluating their applications for imaging transcription in eukaryotic cells

(2016) Muslum Ilgu et al.   METHODS

Engineering a ribozyme cleavage-induced split fluorescent aptamer complementation assay

(2016) Simon Ausländer et al.   NUCLEIC ACIDS RESEARCH

In-Gel Imaging of RNA Processing Using Broccoli Reveals Optimal Aptamer Expression Strategies

(2015) Grigory S. Filonov et al.   CHEMISTRY & BIOLOGY

Novel uses of fluorescent proteins

(2015) Alexander S Mishin et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Emerging fluorescent protein technologies

(2015) Jhon Ralph Enterina et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Dual-colour imaging of RNAs using quencher- and fluorophore-binding aptamers

(2015) Ankita Arora et al.   NUCLEIC ACIDS RESEARCH

Imaging metabolite dynamics in living cells using a Spinach-based riboswitch

(2015) Mingxu You et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Combining Spinach-tagged RNA and gene localization to image gene expression in live yeast

(2015) David Guet et al.   Nature Communications

Tandem Spinach Array for mRNA Imaging in Living Bacterial Cells

(2015) Jichuan Zhang et al.   Scientific Reports

RNA Mango Aptamer-Fluorophore: A Bright, High-Affinity Complex for RNA Labeling and Tracking

(2014) Elena V. Dolgosheina et al.   ACS Chemical Biology

Broccoli: Rapid Selection of an RNA Mimic of Green Fluorescent Protein by Fluorescence-Based Selection and Directed Evolution

(2014) Grigory S. Filonov et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Plug-and-Play Fluorophores Extend the Spectral Properties of Spinach

(2014) Wenjiao Song et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Structural basis for activity of highly efficient RNA mimics of green fluorescent protein

(2014) Katherine Deigan Warner et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Live-cell imaging of Pol II promoter activity to monitor gene expression with RNA IMAGEtag reporters

(2014) Ilchung Shin et al.   NUCLEIC ACIDS RESEARCH

Understanding the Photophysics of the Spinach–DFHBI RNA Aptamer–Fluorogen Complex To Improve Live-Cell RNA Imaging

(2013) Kyu Young Han et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Universal Aptamer-Based Real-Time Monitoring of Enzymatic RNA Synthesis

(2013) Katharina Höfer et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

RNA-Based Fluorescent Biosensors for Live Cell Imaging of Second Messengers Cyclic di-GMP and Cyclic AMP-GMP

(2013) Colleen A. Kellenberger et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Imaging bacterial protein expression using genetically encoded RNA sensors

(2013) Wenjiao Song et al.   NATURE METHODS

A superfolding Spinach2 reveals the dynamic nature of trinucleotide repeat–containing RNA

(2013) Rita L Strack et al.   NATURE METHODS

Programmable folding of fusion RNA in vivo and in vitro driven by pRNA 3WJ motif of phi29 DNA packaging motor

(2013) Dan Shu et al.   NUCLEIC ACIDS RESEARCH

Nanomolar fluorescent detection of c-di-GMP using a modular aptamer strategy

(2012) Shizuka Nakayama et al.   CHEMICAL COMMUNICATIONS

Comparison of Next-Generation Sequencing Systems

(2012) Lin Liu et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

Fluorescence Imaging of Cellular Metabolites with RNA

(2012) Jeremy S. Paige et al.   SCIENCE

Chemically Modulating the Photophysics of the GFP Chromophore

(2011) Jamie Conyard et al.   JOURNAL OF PHYSICAL CHEMISTRY B

RNA Mimics of Green Fluorescent Protein

(2011) J. S. Paige et al.   SCIENCE

Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes

(2010) Zasha Weinberg et al.   GENOME BIOLOGY

Engineered 5S ribosomal RNAs displaying aptamers recognizing vascular endothelial growth factor and malachite green

(2009) Xing Zhang et al.   JOURNAL OF MOLECULAR RECOGNITION

Molecular beacons and related probes for intracellular RNA imaging

(2009) Philip J. Santangelo   Wiley Interdisciplinary Reviews-Nanomedicine and Nanobiotechnology

Transcription monitoring using fused RNA with a dye-binding light-up aptamer as a tag: a blue fluorescent RNA

(2008) Shinsuke Sando et al.   CHEMICAL COMMUNICATIONS

Fluorinated Analogs of Malachite Green: Synthesis and Toxicity

(2008) George Kraus et al.   MOLECULES

Synthesis of New Fluorogenic Cyanine Dyes and Incorporation into RNA Fluoromodules

(2008) Tudor P. Constantin et al.   ORGANIC LETTERS