Global transcriptome responses including small RNAs during mixed-species interactions with methicillin-resistant Staphylococcus aureus and Pseudomonas aeruginosa

RsmW, Pseudomonas aeruginosa small non-coding RsmA-binding RNA upregulated in biofilm versus planktonic growth conditions

(2016) Christine L. Miller et al.   BMC MICROBIOLOGY

Sublethal Concentrations of Carbapenems Alter Cell Morphology and Genomic Expression of Klebsiella pneumoniae Biofilms

(2015) Tricia A. Van Laar et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Secretion of Flagellar Proteins by the Pseudomonas aeruginosa Type III Secretion-Injectisome System

(2015) Dilek Ince et al.   JOURNAL OF BACTERIOLOGY

Coculture of Staphylococcus aureus with Pseudomonas aeruginosa Drives S. aureus towards Fermentative Metabolism and Reduced Viability in a Cystic Fibrosis Model

(2015) Laura M. Filkins et al.   JOURNAL OF BACTERIOLOGY

An Essential Role for Coagulase inStaphylococcus aureusBiofilm Development Reveals New Therapeutic Possibilities for Device-Related Infections

(2015) Marta Zapotoczna et al.   JOURNAL OF INFECTIOUS DISEASES

Staphylokinase Control ofStaphylococcus aureusBiofilm Formation and Detachment Through Host Plasminogen Activation

(2015) Jakub Kwiecinski et al.   JOURNAL OF INFECTIOUS DISEASES

Rot is a key regulator ofStaphylococcus aureusbiofilm formation

(2015) Joe M. Mootz et al.   MOLECULAR MICROBIOLOGY

USA300 and USA500 Clonal Lineages of Staphylococcus aureus Do Not Produce a Capsular Polysaccharide Due to Conserved Mutations in the cap5 Locus

(2015) Susan Boyle-Vavra et al.   mBio

The Role of ExoS in Dissemination of Pseudomonas aeruginosa during Pneumonia

(2015) Stephanie M. Rangel et al.   PLoS Pathogens

Post-transcriptional regulation of the virulence-associated enzyme AlgC by the σ22-dependent small RNA ErsA ofPseudomonas aeruginosa

(2014) Silvia Ferrara et al.   ENVIRONMENTAL MICROBIOLOGY

Fibronectin-binding proteins are required for biofilm formation by community-associated methicillin-resistantStaphylococcus aureusstrain LAC

(2014) Jennifer McCourt et al.   FEMS MICROBIOLOGY LETTERS

Analysis of the Staphylococcus aureus capsule biosynthesis pathway in vitro: Characterization of the UDP-GlcNAc C6 dehydratases CapD and CapE and identification of enzyme inhibitors

(2014) Wenjin Li et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Staphylococcus aureus Alters Growth Activity, Autolysis, and Antibiotic Tolerance in a Human Host-Adapted Pseudomonas aeruginosa Lineage

(2014) C. F. Michelsen et al.   JOURNAL OF BACTERIOLOGY

A small RNA controls a protein regulator involved in antibiotic resistance in Staphylococcus aureus

(2014) Alex Eyraud et al.   NUCLEIC ACIDS RESEARCH

Adaptation of Pseudomonas aeruginosa in Cystic Fibrosis Airways Influences Virulence of Staphylococcus aureus In Vitro and Murine Models of Co-Infection

(2014) Rossella Baldan et al.   PLoS One

Impact of a novel, antimicrobial dressing on in vivo,Pseudomonas aeruginosawound biofilm: Quantitative comparative analysis using a rabbit ear model

(2014) Akhil K. Seth et al.   WOUND REPAIR AND REGENERATION

A Non-Coding RNA Promotes Bacterial Persistence and Decreases Virulence by Regulating a Regulator in Staphylococcus aureus

(2014) Cédric Romilly et al.   PLoS Pathogens

Analysis of the Small RNA Transcriptional Response in Multidrug-Resistant Staphylococcus aureus after Antimicrobial Exposure

(2013) Benjamin P. Howden et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

NrsZ: a novel, processed, nitrogen-dependent, small non-coding RNA that regulatesPseudomonas aeruginosa PAO1 virulence

(2013) Nicolas Wenner et al.   ENVIRONMENTAL MICROBIOLOGY

MrkD1Pfrom Klebsiella pneumoniae Strain IA565 Allows for Coexistence with Pseudomonas aeruginosa and Protection from Protease-Mediated Biofilm Detachment

(2013) Brandon M. Childers et al.   INFECTION AND IMMUNITY

The importance of regulatory RNAs in Staphylococcus aureus

(2013) Arnaud Tomasini et al.   INFECTION GENETICS AND EVOLUTION

Diverse type VI secretion phospholipases are functionally plastic antibacterial effectors

(2013) Alistair B. Russell et al.   NATURE

Interactions of Methicillin Resistant Staphylococcus aureus USA300 and Pseudomonas aeruginosa in Polymicrobial Wound Infection

(2013) Irena Pastar et al.   PLoS One

Community surveillance enhances Pseudomonas aeruginosa virulence during polymicrobial infection

(2013) A. Korgaonkar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Genetic Resource for Rapid and Comprehensive Phenotype Screening of Nonessential Staphylococcus aureus Genes

(2013) P. D. Fey et al.   mBio

Antibacterial activity of extracellular compounds produced by a Pseudomonas strain against methicillin-resistant Staphylococcus aureus (MRSA) strains

(2013) Viviane F Cardozo et al.   Annals of Clinical Microbiology and Antimicrobials

Nasal Colonisation by Staphylococcus aureus Depends upon Clumping Factor B Binding to the Squamous Epithelial Cell Envelope Protein Loricrin

(2013) Michelle E. Mulcahy et al.   PLoS Pathogens

Identification of Pseudomonas aeruginosa Phenazines that Kill Caenorhabditis elegans

(2013) Brent Cezairliyan et al.   PLoS Pathogens

Molecular Basis of In Vivo Biofilm Formation by Bacterial Pathogens

(2012) Hwang-Soo Joo et al.   CHEMISTRY & BIOLOGY

Quorum Sensing Inhibition in Pseudomonas aeruginosa PAO1 by Antagonistic Compound Phenylacetic Acid

(2012) Khadar Syed Musthafa et al.   CURRENT MICROBIOLOGY

An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs

(2012) Yanjie Chao et al.   EMBO JOURNAL

Genome-wide identification of novel small RNAs in Pseudomonas aeruginosa

(2012) María Gómez-Lozano et al.   ENVIRONMENTAL MICROBIOLOGY

Acceleration of protease effect on Staphylococcus aureus biofilm dispersal

(2012) Joo-Hyeon Park et al.   FEMS MICROBIOLOGY LETTERS

Structural and Functional Properties of Staphylococcal Superantigen-Like Protein 4

(2012) Stefan J. Hermans et al.   INFECTION AND IMMUNITY

Quantitative Comparison and Analysis of Species-Specific Wound Biofilm Virulence Using an In Vivo, Rabbit-Ear Model

(2012) Akhil K. Seth et al.   JOURNAL OF THE AMERICAN COLLEGE OF SURGEONS

Analysis of the small RNA P16/RgsA in the plant pathogen Pseudomonas syringae pv. tomato strain DC3000

(2012) S. H. Park et al.   MICROBIOLOGY-SGM

Staphylococcus aureus clumping factor B mediates biofilm formation in the absence of calcium

(2012) N. M. Abraham et al.   MICROBIOLOGY-SGM

BSRD: a repository for bacterial small regulatory RNA

(2012) Lei Li et al.   NUCLEIC ACIDS RESEARCH

The Pseudomonas aeruginosa Transcriptome in Planktonic Cultures and Static Biofilms Using RNA Sequencing

(2012) Andreas Dötsch et al.   PLoS One

Comparative Profiling of Pseudomonas aeruginosa Strains Reveals Differential Expression of Novel Unique and Conserved Small RNAs

(2012) Silvia Ferrara et al.   PLoS One

Comparative Analysis of Single-Species and Polybacterial Wound Biofilms Using a Quantitative, In Vivo, Rabbit Ear Model

(2012) Akhil K. Seth et al.   PLoS One

Small regulatory RNAs inPseudomonas aeruginosa

(2012) Elisabeth Sonnleitner et al.   RNA Biology

Time course study of delayed wound healing in a biofilm-challenged diabetic mouse model

(2012) Ge Zhao et al.   WOUND REPAIR AND REGENERATION

CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing

(2011) Samuel V Angiuoli et al.   BMC BIOINFORMATICS

Common pathogens in burn wound and changes in their drug sensitivity

(2011) Ezzatollah Rezaei et al.   BURNS

Regulation by Small RNAs in Bacteria: Expanding Frontiers

(2011) Gisela Storz et al.   MOLECULAR CELL

Type VI secretion delivers bacteriolytic effectors to target cells

(2011) Alistair B. Russell et al.   NATURE

A cis-antisense RNA acts in trans in Staphylococcus aureus to control translation of a human cytolytic peptide

(2011) Nour Sayed et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

An In Vivo Polymicrobial Biofilm Wound Infection Model to Study Interspecies Interactions

(2011) Trevor Dalton et al.   PLoS One

Physiology of Pseudomonas aeruginosa in biofilms as revealed by transcriptome analysis

(2010) James P Folsom et al.   BMC MICROBIOLOGY

A Type VI Secretion System of Pseudomonas aeruginosa Targets a Toxin to Bacteria

(2010) Rachel D. Hood et al.   Cell Host & Microbe

SsrA (tmRNA) acts as an antisense RNA to regulateStaphylococcus aureuspigment synthesis by base pairing withcrtMNmRNA

(2010) Yu Liu et al.   FEBS LETTERS

In vitro and in vivo model systems to study microbial biofilm formation

(2010) Tom Coenye et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Identification of differentially expressed small non-protein-coding RNAs in Staphylococcus aureus displaying both the normal and the small-colony variant phenotype

(2010) Luay F. Abu-Qatouseh et al.   JOURNAL OF MOLECULAR MEDICINE-JMM

RNAs: regulators of bacterial virulence

(2010) Jonas Gripenland et al.   NATURE REVIEWS MICROBIOLOGY

Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism

(2010) Chantal Bohn et al.   NUCLEIC ACIDS RESEARCH

Abundance of type I toxin–antitoxin systems in bacteria: searches for new candidates and discovery of novel families

(2010) Elizabeth M. Fozo et al.   NUCLEIC ACIDS RESEARCH

Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes

(2010) G. L. Winsor et al.   NUCLEIC ACIDS RESEARCH

Cartography of Methicillin-Resistant S. aureus Transcripts: Detection, Orientation and Temporal Expression during Growth Phase and Stress Conditions

(2010) Marie Beaume et al.   PLoS One

Delayed wound healing in diabetic (db/db) mice with Pseudomonas aeruginosa biofilm challenge: a model for the study of chronic wounds

(2010) Ge Zhao et al.   WOUND REPAIR AND REGENERATION

Biofilms: do they affect wound healing?

(2010) Collette H Thomson   International Wound Journal

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Small-Colony Variant Selection as a Survival Strategy for Staphylococcus aureus in the Presence of Pseudomonas aeruginosa

(2009) L. Biswas et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

The transcriptional programme of Salmonella enterica serovar Typhimurium reveals a key role for tryptophan metabolism in biofilms

(2009) Shea Hamilton et al.   BMC GENOMICS

Regulatory RNAs in Bacteria

(2009) Lauren S. Waters et al.   CELL

JBrowse: A next-generation genome browser

(2009) M. E. Skinner et al.   GENOME RESEARCH

Pseudomonas aeruginosa extracellular products inhibit staphylococcal growth, and disrupt established biofilms produced by Staphylococcus epidermidis

(2009) Z. Qin et al.   MICROBIOLOGY-SGM

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation

(2009) Thomas Geissmann et al.   NUCLEIC ACIDS RESEARCH

Small RNA as global regulator of carbon catabolite repression in Pseudomonas aeruginosa

(2009) E. Sonnleitner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assembly and Development of the Pseudomonas aeruginosa Biofilm Matrix

(2009) Luyan Ma et al.   PLoS Pathogens

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Iron acquisition by the haem-binding Isd proteins inStaphylococcus aureus: studies of the mechanism using magnetic circular dichroism

(2008) Michael T. Tiedemann et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Genome-wide search reveals a novel GacA-regulated small RNA in Pseudomonas species

(2008) Nicolas González et al.   BMC GENOMICS

Survey of bacterial diversity in chronic wounds using Pyrosequencing, DGGE, and full ribosome shotgun sequencing

(2008) Scot E Dowd et al.   BMC MICROBIOLOGY

Pathogenesis of Methicillin‐ResistantStaphylococcus aureusInfection

(2008) Rachel J. Gordon et al.   CLINICAL INFECTIOUS DISEASES

Distribution, Organization, and Ecology of Bacteria in Chronic Wounds

(2008) K. Kirketerp-Moller et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Detection of small RNAs in Pseudomonas aeruginosa by RNomics and structure-based bioinformatic tools

(2008) E. Sonnleitner et al.   MICROBIOLOGY-SGM

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH