The Pseudomonas aeruginosa Transcriptome in Planktonic Cultures and Static Biofilms Using RNA Sequencing

Small RNAs as regulators of primary and secondary metabolism in Pseudomonas species

(2011) Elisabeth Sonnleitner et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Leaderless genes in bacteria: clue to the evolution of translation initiation mechanisms in prokaryotes

(2011) Xiaobin Zheng et al.   BMC GENOMICS

The small RNA PhrS stimulates synthesis of the Pseudomonas aeruginosa quinolone signal

(2011) Elisabeth Sonnleitner et al.   MOLECULAR MICROBIOLOGY

Bacterial transcriptomics: what is beyond the RNA horiz-ome?

(2011) Marc Güell et al.   NATURE REVIEWS MICROBIOLOGY

Duplex-specific nuclease efficiently removes rRNA for prokaryotic RNA-seq

(2011) Hana Yi et al.   NUCLEIC ACIDS RESEARCH

The clinical impact of bacterial biofilms

(2011) Niels Høiby et al.   International Journal of Oral Science

Physiology of Pseudomonas aeruginosa in biofilms as revealed by transcriptome analysis

(2010) James P Folsom et al.   BMC MICROBIOLOGY

Transcriptome Analysis of Pseudomonas syringae Identifies New Genes, Noncoding RNAs, and Antisense Activity

(2010) M. J. Filiatrault et al.   JOURNAL OF BACTERIOLOGY

The Novel Two-Component Regulatory System BfiSR Regulates Biofilm Development by Controlling the Small RNA rsmZ through CafA

(2010) O. E. Petrova et al.   JOURNAL OF BACTERIOLOGY

The 4.5S RNA component of the signal recognition particle is required for group A Streptococcus virulence

(2010) J. Trevino et al.   MICROBIOLOGY-SGM

The primary transcriptome of the major human pathogen Helicobacter pylori

(2010) Cynthia M. Sharma et al.   NATURE

A 96-well-plate–based optical method for the quantitative and qualitative evaluation of Pseudomonas aeruginosa biofilm formation and its application to susceptibility testing

(2010) Mathias Müsken et al.   Nature Protocols

Positive regulation by small RNAs and the role of Hfq

(2010) T. Soper et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Evolving concepts in biofilm infections

(2009) Luanne Hall-Stoodley et al.   CELLULAR MICROBIOLOGY

Gene expression characteristics of a cystic fibrosis epidemic strain ofPseudomonas aeruginosaduring biofilm and planktonic growth

(2009) Jim Manos et al.   FEMS MICROBIOLOGY LETTERS

Nutrient regime regulates complex transcriptional start site usage within a Pseudoalteromonas chitinase gene cluster

(2009) Marina W Delpin et al.   ISME Journal

Genetic determinants of Pseudomonas aeruginosa biofilm establishment

(2009) M. Musken et al.   MICROBIOLOGY-SGM

Biofilms and type III secretion are not mutually exclusive in Pseudomonas aeruginosa

(2009) H. Mikkelsen et al.   MICROBIOLOGY-SGM

The GacS/GacA signal transduction system ofPseudomonas aeruginosaacts exclusively through its control over the transcription of the RsmY and RsmZ regulatory small RNAs

(2009) Anja Brencic et al.   MOLECULAR MICROBIOLOGY

The type III secretion system of Pseudomonas aeruginosa: infection by injection

(2009) Alan R. Hauser   NATURE REVIEWS MICROBIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Genome-wide search reveals a novel GacA-regulated small RNA in Pseudomonas species

(2008) Nicolas González et al.   BMC GENOMICS

P. aeruginosa Biofilms in CF Infection

(2008) Victoria E. Wagner et al.   CLINICAL REVIEWS IN ALLERGY & IMMUNOLOGY

In Vitro Analysis of Tobramycin-Treated Pseudomonas aeruginosa Biofilms on Cystic Fibrosis-Derived Airway Epithelial Cells

(2008) G. G. Anderson et al.   INFECTION AND IMMUNITY

Transcriptome analyses and biofilm-forming characteristics of a clonal Pseudomonas aeruginosa from the cystic fibrosis lung

(2008) J. Manos et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Detection of small RNAs in Pseudomonas aeruginosa by RNomics and structure-based bioinformatic tools

(2008) E. Sonnleitner et al.   MICROBIOLOGY-SGM

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes

(2008) G. L. Winsor et al.   NUCLEIC ACIDS RESEARCH

Indole and 7-hydroxyindole diminishPseudomonas aeruginosavirulence

(2008) Jintae Lee et al.   Microbial Biotechnology