Predicting Essential Genes and Proteins Based on Machine Learning and Network Topological Features: A Comprehensive Review

Analyzing complex networks through correlations in centrality measurements

(2015) José Ricardo Furlan Ronqui et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

Predicting essential genes for identifying potential drug targets in Aspergillus fumigatus

(2014) Yao Lu et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Training Set Selection for the Prediction of Essential Genes

(2014) Jian Cheng et al.   PLoS One

Nodes occupying central positions in human tissue specific PPI networks are enriched with many splice variants

(2014) Anupam Sinha et al.   PROTEOMICS

A new computational strategy for predicting essential genes

(2013) Jian Cheng et al.   BMC GENOMICS

CEG: a database of essential gene clusters

(2013) Yuan-Nong Ye et al.   BMC GENOMICS

Iteration method for predicting essential proteins based on orthology and protein-protein interaction networks

(2012) Wei Peng et al.   BMC Systems Biology

A new essential protein discovery method based on the integration of protein-protein interaction and gene expression data

(2012) Min Li et al.   BMC Systems Biology

High Confidence Prediction of Essential Genes in Burkholderia Cenocepacia

(2012) Mario Juhas et al.   PLoS One

Identification of Essential Proteins Based on Edge Clustering Coefficient

(2011) Jianxin Wang et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

OGEE: an online gene essentiality database

(2011) Wei-Hua Chen et al.   NUCLEIC ACIDS RESEARCH

Identifying essential genes in bacterial metabolic networks with machine learning methods

(2010) Kitiporn Plaimas et al.   BMC Systems Biology

Phenotypic Landscape of a Bacterial Cell

(2010) Robert J. Nichols et al.   CELL

Investigating the predictability of essential genes across distantly related organisms using an integrative approach

(2010) Jingyuan Deng et al.   NUCLEIC ACIDS RESEARCH

Towards the prediction of essential genes by integration of network topology, cellular localization and biological process information

(2009) Marcio L Acencio et al.   BMC BIOINFORMATICS

Computational prediction of essential genes in an unculturable endosymbiotic bacterium, Wolbachia of Brugia malayi

(2009) Alexander G Holman et al.   BMC MICROBIOLOGY

Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants

(2009) G. C. Langridge et al.   GENOME RESEARCH

A Survey on Transfer Learning

(2009) Sinno Jialin Pan et al.   IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

Predicting essential genes based on network and sequence analysis

(2009) Yih-Chii Hwang et al.   Molecular BioSystems

What are decision trees?

(2008) Carl Kingsford et al.   NATURE BIOTECHNOLOGY

DEG 5.0, a database of essential genes in both prokaryotes and eukaryotes

(2008) R. Zhang et al.   NUCLEIC ACIDS RESEARCH

Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality

(2008) Elena Zotenko et al.   PLoS Computational Biology

In silico network topology-based prediction of gene essentiality

(2007) João Paulo Müller da Silva et al.   PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS