Identification of Novel and Conserved miRNAs in Leaves of In vitro Grown Citrus reticulata “Lugan” Plantlets by Solexa Sequencing

Genomewide analysis of small RNAs in nonembryogenic and embryogenic tissues of citrus: microRNA-and siRNA-mediated transcript cleavage involved in somatic embryogenesis

(2015) Xiao-Meng Wu et al.   PLANT BIOTECHNOLOGY JOURNAL

The role of miR156/SPLs modules in Arabidopsis lateral root development

(2015) Niu Yu et al.   PLANT JOURNAL

Identification of novel drought-responsive microRNAs and trans-acting siRNAs from Sorghum bicolor (L.) Moench by high-throughput sequencing analysis

(2015) Amit Katiyar et al.   Frontiers in Plant Science

Arabidopsis microRNA expression regulation in a wide range of abiotic stress responses

(2015) Maria Barciszewska-Pacak et al.   Frontiers in Plant Science

Genome-wide comparison of microRNAs and their targeted transcripts among leaf, flower and fruit of sweet orange

(2014) Yuanlong Liu et al.   BMC GENOMICS

Identification and functional analysis of novel and conserved microRNAs in tomato

(2014) Yushi Luan et al.   MOLECULAR BIOLOGY REPORTS

Rfam 12.0: updates to the RNA families database

(2014) Eric P. Nawrocki et al.   NUCLEIC ACIDS RESEARCH

Development-associated microRNAs in grains of wheat (Triticum aestivum L.)

(2013) Fanrong Meng et al.   BMC PLANT BIOLOGY

Comparative Analysis Reveals Dynamic Changes in miRNAs and Their Targets and Expression during Somatic Embryogenesis in Longan (Dimocarpus longan Lour.)

(2013) Yuling Lin et al.   PLoS One

PsRobot: a web-based plant small RNA meta-analysis toolbox

(2012) Hua-Jun Wu et al.   NUCLEIC ACIDS RESEARCH

IAA-Ala Resistant3, an Evolutionarily Conserved Target of miR167, Mediates Arabidopsis Root Architecture Changes during High Osmotic Stress

(2012) N. Kinoshita et al.   PLANT CELL

The Transcription Factors BEL1 and SPL Are Required for Cytokinin and Auxin Signaling During Ovule Development in Arabidopsis

(2012) S. Bencivenga et al.   PLANT CELL

Identification and characterization of maize microRNAs involved in the very early stage of seed germination

(2011) Liwen Wang et al.   BMC GENOMICS

MicroRNAs and their diverse functions in plants

(2011) Guiling Sun   PLANT MOLECULAR BIOLOGY

Discovery of Porcine microRNAs in Multiple Tissues by a Solexa Deep Sequencing Approach

(2011) Sheng-Song Xie et al.   PLoS One

High-Throughput Sequencing of RNA Silencing-Associated Small RNAs in Olive (Olea europaea L.)

(2011) Livia Donaire et al.   PLoS One

Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa

(2011) Li Wei et al.   GENOME BIOLOGY

Deep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata)

(2010) Changnian Song et al.   BMC GENOMICS

Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type

(2010) Qiang Xu et al.   BMC GENOMICS

Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)

(2010) Chuan-Zhi Zhao et al.   BMC PLANT BIOLOGY

Identification and characterization of conserved microRNAs and their target genes in wheat (Triticum aestivum)

(2010) Z.J. Yin et al.   GENETICS AND MOLECULAR RESEARCH

miR171 Family Members are Involved in Drought Response in Solanum tuberosum

(2010) Eul-Won Hwang et al.   JOURNAL OF PLANT BIOLOGY

DNA Methylation Mediated by a MicroRNA Pathway

(2010) Liang Wu et al.   MOLECULAR CELL

MicroRNA171c-Targeted SCL6-II, SCL6-III, and SCL6-IV Genes Regulate Shoot Branching in Arabidopsis

(2010) Long Wang et al.   Molecular Plant

Targetfinder.org: a resource for systematic discovery of transcription factor target genes

(2010) S. M. Kielbasa et al.   NUCLEIC ACIDS RESEARCH

Stage and tissue-specific modulation of ten conserved miRNAs and their targets during somatic embryogenesis of Valencia sweet orange

(2010) Xiao-Meng Wu et al.   PLANTA

Identification of miRNA from Porphyra yezoensis by High-Throughput Sequencing and Bioinformatics Analysis

(2010) Chengwei Liang et al.   PLoS One

Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response

(2009) Jingyu Zhang et al.   BMC GENOMICS

Identification of MicroRNAs in Wild Soybean (Glycine soja)

(2009) Rui Chen et al.   Journal of Integrative Plant Biology

Uncovering Small RNA-Mediated Responses to Phosphate Deficiency in Arabidopsis by Deep Sequencing

(2009) L.-C. Hsieh et al.   PLANT PHYSIOLOGY

Biotic and abiotic stress down-regulate miR398 expression in Arabidopsis

(2009) Guru Jagadeeswaran et al.   PLANTA

Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids

(2009) M. Ha et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SOAP: short oligonucleotide alignment program

(2008) R. Li et al.   BIOINFORMATICS

High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families

(2008) Gyorgy Szittya et al.   BMC GENOMICS

In silico identification of conserved microRNAs in large number of diverse plant species

(2008) Ramanjulu Sunkar et al.   BMC PLANT BIOLOGY

Big impacts by small RNAs in plant development

(2008) George Chuck et al.   CURRENT OPINION IN PLANT BIOLOGY

Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa

(2008) R. D. Morin et al.   GENOME RESEARCH

Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

(2008) S. Moxon et al.   GENOME RESEARCH

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

Dual Effects of miR156-Targeted SPL Genes and CYP78A5/KLUH on Plastochron Length and Organ Size in Arabidopsis thaliana

(2008) J.-W. Wang et al.   PLANT CELL

The microRNA regulated SBP-box genes SPL9 and SPL15 control shoot maturation in Arabidopsis

(2008) Stefan Schwarz et al.   PLANT MOLECULAR BIOLOGY