Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem

Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages

(2014) E. A. Ottesen et al.   SCIENCE

New Approaches Indicate Constant Viral Diversity despite Shifts in Assemblage Structure in an Australian Hypersaline Lake

(2013) Joanne B. Emerson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Insights into archaeal evolution and symbiosis from the genomes of a nanoarchaeon and its inferred crenarchaeal host from Obsidian Pool, Yellowstone National Park

(2013) Mircea Podar et al.   Biology Direct

Seasonal fluctuations in ionic concentrations drive microbial succession in a hypersaline lake community

(2013) Sheila Podell et al.   ISME Journal

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Assembly-Driven Community Genomics of a Hypersaline Microbial Ecosystem

(2013) Sheila Podell et al.   PLoS One

A Role for Programmed Cell Death in the Microbial Loop

(2013) Mónica V. Orellana et al.   PLoS One

Pattern and synchrony of gene expression among sympatric marine microbial populations

(2013) E. A. Ottesen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Virus-Host and CRISPR Dynamics in Archaea-Dominated Hypersaline Lake Tyrrell, Victoria, Australia

(2013) Joanne B. Emerson et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Characterization of eukaryotic microbial diversity in hypersaline Lake Tyrrell, Australia

(2013) Karla B. Heidelberg et al.   Frontiers in Microbiology

Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling

(2013) Laura A Hug et al.   Microbiome

Dynamic Viral Populations in Hypersaline Systems as Revealed by Metagenomic Assembly

(2012) Joanne B. Emerson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Viral lysis and nanoflagellate grazing as factors controlling diel variations of Synechococcus spp. summer abundance in coastal waters of Taiwan

(2012) AY Tsai et al.   AQUATIC MICROBIAL ECOLOGY

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Xenorhodopsins, an enigmatic new class of microbial rhodopsins horizontally transferred between archaea and bacteria

(2011) Juan A Ugalde et al.   Biology Direct

De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities

(2011) Priya Narasingarao et al.   ISME Journal

A portable cryo-plunger for on-site intact cryogenic microscopy sample preparation in natural environments

(2011) Luis R. Comolli et al.   MICROSCOPY RESEARCH AND TECHNIQUE

New Abundant Microbial Groups in Aquatic Hypersaline Environments

(2011) Rohit Ghai et al.   Scientific Reports

EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

(2011) Christopher S Miller et al.   GENOME BIOLOGY

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Viral and microbial community dynamics in four aquatic environments

(2010) Beltran Rodriguez-Brito et al.   ISME Journal

Microbial community proteomics: elucidating the catalysts and metabolic mechanisms that drive the Earth's biogeochemical cycles

(2009) Paul Wilmes et al.   CURRENT OPINION IN MICROBIOLOGY

Diurnally Entrained Anticipatory Behavior in Archaea

(2009) Kenia Whitehead et al.   PLoS One

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

A Cyanobacterial Circadian Clockwork

(2008) Carl Hirschie Johnson et al.   CURRENT BIOLOGY

Three-dimensional analysis of the structure and ecology of a novel, ultra-small archaeon

(2008) Luis R Comolli et al.   ISME Journal

Molecular eco-systems biology: towards an understanding of community function

(2008) Jeroen Raes et al.   NATURE REVIEWS MICROBIOLOGY

SYSTEMS BIOLOGY: The Scale of Prediction

(2008) N. S. Baliga   SCIENCE

Predictive Behavior Within Microbial Genetic Networks

(2008) I. Tagkopoulos et al.   SCIENCE

A simple, fast, and accurate method of phylogenomic inference

(2008) Martin Wu et al.   GENOME BIOLOGY