Unraveling the Functions of the Macroalgal Microbiome

Biorefining of marine macroalgal biomass for production of biofuel and commodity chemicals

(2015) Ravi S. Baghel et al.   GREEN CHEMISTRY

Seaweed cultivation: potential and challenges of crop domestication at an unprecedented pace

(2015) Rafael Loureiro et al.   NEW PHYTOLOGIST

A comprehensive analysis of the microbial communities of healthy and diseased marine macroalgae and the detection of known and potential bacterial pathogens

(2015) Enrique Zozaya-Valdes et al.   Frontiers in Microbiology

Effect of quorum sensing signals produced by seaweed-associated bacteria on carpospore liberation from Gracilaria dura

(2015) Ravindra Pal Singh et al.   Frontiers in Plant Science

The green seaweed Ulva: a model system to study morphogenesis

(2015) Thomas Wichard et al.   Frontiers in Plant Science

Combining metagenomics, metatranscriptomics and viromics to explore novel microbial interactions: towards a systems-level understanding of human microbiome

(2015) Shirley Bikel et al.   Computational and Structural Biotechnology Journal

Microbial Metabolism and Community Structure in Response to Bioelectrochemically Enhanced Remediation of Petroleum Hydrocarbon-Contaminated Soil

(2014) Lu Lu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Seaweed-microbial interactions: key functions of seaweed-associated bacteria

(2014) Ravindra Pal Singh et al.   FEMS MICROBIOLOGY ECOLOGY

Possible change in distribution of seaweed, Sargassum horneri, in northeast Asia under A2 scenario of global warming and consequent effect on some fish

(2014) Teruhisa Komatsu et al.   MARINE POLLUTION BULLETIN

A metabolic approach to study algal-bacterial interactions in changing environments

(2014) Simon M. Dittami et al.   MOLECULAR ECOLOGY

Bacterial quorum sensing compounds are important modulators of microbe-plant interactions

(2014) Anton Hartmann et al.   Frontiers in Plant Science

Chemical Signaling Between Plants and Plant-Pathogenic Bacteria

(2013) Vittorio Venturi et al.   Annual Review of Phytopathology

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

Soil microbiomes vary in their ability to confer drought tolerance to Arabidopsis

(2013) Gaston Zolla et al.   APPLIED SOIL ECOLOGY

Xenobiotics and the Human Gut Microbiome: Metatranscriptomics Reveal the Active Players

(2013) Luke K. Ursell et al.   Cell Metabolism

Community composition of thePlanctomycetesassociated with different macroalgae

(2013) Joana Bondoso et al.   FEMS MICROBIOLOGY ECOLOGY

Metaproteomics of our microbiome — Developing insight in function and activity in man and model systems

(2013) Carolin A. Kolmeder et al.   Journal of Proteomics

Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota

(2013) Koji Atarashi et al.   NATURE

Permanent residents or temporary lodgers: characterizing intracellular bacterial communities in the siphonous green alga Bryopsis

(2013) J. Hollants et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Bacterial Quorum Sensing: Its Role in Virulence and Possibilities for Its Control

(2013) S. T. Rutherford et al.   Cold Spring Harbor Perspectives in Medicine

Stool substitute transplant therapy for the eradication of Clostridium difficile infection: ‘RePOOPulating’ the gut

(2013) Elaine O Petrof et al.   Microbiome

Transcriptomic analysis of the red seaweed Laurencia dendroidea (Florideophyceae, Rhodophyta) and its microbiome

(2012) Louisi de Oliveira et al.   BMC GENOMICS

Bacterial diversity in relation to secondary production and succession on surfaces of the kelp Laminaria hyperborea

(2012) Mia M Bengtsson et al.   ISME Journal

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Comparison of Next-Generation Sequencing Systems

(2012) Lin Liu et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

Mass Spectrometry-Based Metabolite Profiling and Bacterial Diversity Characterization of Korean Traditional Meju During Fermentation

(2012) Su Yun Lee   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

Growth and Thallus Morphogenesis ofUlva mutabilis(Chlorophyta) Depends on A Combination of Two Bacterial Species Excreting Regulatory Factors

(2012) Michael Spoerner et al.   JOURNAL OF PHYCOLOGY

Culturing a plant microbiome community at the cross-Rhodes

(2012) Sarah L. Lebeis et al.   NEW PHYTOLOGIST

Harnessing the rhizosphere microbiome through plant breeding and agricultural management

(2012) Matthew G. Bakker et al.   PLANT AND SOIL

Spatial distribution of prokaryotic symbionts and ammoxidation, denitrifier bacteria in marine sponge Astrosclera willeyana

(2012) Zhenya Yang et al.   Scientific Reports

The Second Skin: Ecological Role of Epibiotic Biofilms on Marine Organisms

(2012) Martin Wahl et al.   Frontiers in Microbiology

Life without a cell membrane: Challenging the specificity of bacterial endophytes within Bryopsis (Bryopsidales, Chlorophyta)

(2011) Joke Hollants et al.   BMC MICROBIOLOGY

Microbial Metabolomics

(2011) Jane Tang   CURRENT GENOMICS

Genomic analysis identifies association of Fusobacterium with colorectal carcinoma

(2011) A. D. Kostic et al.   GENOME RESEARCH

Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

(2011) Claudia Knief et al.   ISME Journal

Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease

(2011) Zeneng Wang et al.   NATURE

Legacy Effects of Canopy Disturbance on Ecosystem Functioning in Macroalgal Assemblages

(2011) Leigh W. Tait et al.   PLoS One

Bacterial community assembly based on functional genes rather than species

(2011) C. Burke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Isolation of seaweed-associated bacteria and their morphogenesis-inducing capability in axenic cultures of the green alga Ulva fasciata

(2010) RP Singh et al.   Aquatic Biology

Epibacterial community patterns on marine macroalgae are host-specific but temporally variable

(2010) Tim Lachnit et al.   ENVIRONMENTAL MICROBIOLOGY

A window into third generation sequencing

(2010) E. E. Schadt et al.   HUMAN MOLECULAR GENETICS

Composition, uniqueness and variability of the epiphytic bacterial community of the green alga Ulva australis

(2010) Catherine Burke et al.   ISME Journal

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Microorganisms and climate change: terrestrial feedbacks and mitigation options

(2010) Brajesh K. Singh et al.   NATURE REVIEWS MICROBIOLOGY

Induction of Colonic Regulatory T Cells by Indigenous Clostridium Species

(2010) K. Atarashi et al.   SCIENCE

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

Tropical marine macroalgae as potential sources of nutritionally important PUFAs

(2009) Puja Kumari et al.   FOOD CHEMISTRY

Variability and abundance of the epiphytic bacterial community associated with a green marine Ulvacean alga

(2009) Niina A Tujula et al.   ISME Journal

Plant Growth-Promoting Rhizobacteria Allow Reduced Application Rates of Chemical Fertilizers

(2009) A. O. Adesemoye et al.   MICROBIAL ECOLOGY

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Altered profiles of intestinal microbiota and organic acids may be the origin of symptoms in irritable bowel syndrome

(2009) c. tana et al.   NEUROGASTROENTEROLOGY AND MOTILITY

Topographical and Temporal Diversity of the Human Skin Microbiome

(2009) E. A. Grice et al.   SCIENCE

Next-Generation DNA Sequencing Methods

(2008) Elaine R. Mardis   Annual Review of Genomics and Human Genetics

Separation and mass spectrometry in microbial metabolomics

(2008) David E Garcia et al.   CURRENT OPINION IN MICROBIOLOGY

Global distribution and diversity of coral-associatedArchaeaand their possible role in the coral holobiont nitrogen cycle

(2008) Nachshon Siboni et al.   ENVIRONMENTAL MICROBIOLOGY

Phylogenetic analysis of bacteria associated with Laminaria saccharina

(2008) Tim Staufenberger et al.   FEMS MICROBIOLOGY ECOLOGY

Shotgun metaproteomics of the human distal gut microbiota

(2008) Nathan C Verberkmoes et al.   ISME Journal

Systems biology: Metabonomics

(2008) Jeremy K. Nicholson et al.   NATURE

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS