Deep Subsurface Life from North Pond: Enrichment, Isolation, Characterization and Genomes of Heterotrophic Bacteria
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Deep Subsurface Life from North Pond: Enrichment, Isolation, Characterization and Genomes of Heterotrophic Bacteria
Authors
Keywords
-
Journal
Frontiers in Microbiology
Volume 7, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2016-05-10
DOI
10.3389/fmicb.2016.00678
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- (2015) Donovan H. Parks et al. GENOME RESEARCH
- VizBin - an application for reference-independent visualization and human-augmented binning of metagenomic data
- (2015) Cedric C Laczny et al. Microbiome
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
- (2014) Susannah J Salter et al. BMC BIOLOGY
- Microorganisms persist at record depths in the subseafloor of the Canterbury Basin
- (2014) Maria-Cristina Ciobanu et al. ISME Journal
- MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
- (2014) Yu-Wei Wu et al. Microbiome
- Gene expression in the deep biosphere
- (2013) William D. Orsi et al. NATURE
- Evidence for Microbial Carbon and Sulfur Cycling in Deeply Buried Ridge Flank Basalt
- (2013) M. A. Lever et al. SCIENCE
- Oxygen consumption rates in subseafloor basaltic crust derived from a reaction transport model
- (2013) Beth N. Orcutt et al. Nature Communications
- The Deep, Dark Energy Biosphere: Intraterrestrial Life on Earth
- (2012) Katrina J. Edwards et al. Annual Review of Earth and Planetary Sciences
- SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
- (2012) Elmar Pruesse et al. BIOINFORMATICS
- Culturing captures members of the soil rare biosphere
- (2012) Ashley Shade et al. ENVIRONMENTAL MICROBIOLOGY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Endospore abundance, microbial growth and necromass turnover in deep sub-seafloor sediment
- (2012) Bente Aa. Lomstein et al. NATURE
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- Isolation of Sulfate-Reducing Bacteria from Sediments Above the Deep-Subseafloor Aquifer
- (2012) Katja Fichtel et al. Frontiers in Microbiology
- Evidence for Direct Electron Transfer by a Gram-Positive Bacterium Isolated from a Microbial Fuel Cell
- (2011) K. C. Wrighton et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- IMG: the integrated microbial genomes database and comparative analysis system
- (2011) V. M. Markowitz et al. NUCLEIC ACIDS RESEARCH
- Linking microbial heterotrophic activity and sediment lithology in oxic, oligotrophic sub-seafloor sediments of the North Atlantic Ocean
- (2011) Picard Frontiers in Microbiology
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- Jalview Version 2--a multiple sequence alignment editor and analysis workbench
- (2009) A. M. Waterhouse et al. BIOINFORMATICS
- Production of cryoprotectant extracellular polysaccharide substances (EPS) by the marine psychrophilic bacterium Colwellia psychrerythraea strain 34H under extreme conditionsThis article is one of a selection of papers in the Special Issue on Polar and Alpine Microbiology.
- (2009) Joseph G. Marx et al. CANADIAN JOURNAL OF MICROBIOLOGY
- Diversity of culturable marine filamentous fungi from deep-sea hydrothermal vents
- (2009) Gaëtan Burgaud et al. ENVIRONMENTAL MICROBIOLOGY
- FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
- (2009) M. N. Price et al. MOLECULAR BIOLOGY AND EVOLUTION
- Subseafloor sedimentary life in the South Pacific Gyre
- (2009) Steven D'Hondt et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genomic Insights into Mn(II) Oxidation by the Marine Alphaproteobacterium Aurantimonas sp. Strain SI85-9A1
- (2008) G. J. Dick et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Glutathione transferases in bacteria
- (2008) Nerino Allocati et al. FEBS Journal
- The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics
- (2008) B. L. Cantarel et al. NUCLEIC ACIDS RESEARCH
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started