Identification, Recovery, and Refinement of Hitherto Undescribed Population-Level Genomes from the Human Gastrointestinal Tract
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Identification, Recovery, and Refinement of Hitherto Undescribed Population-Level Genomes from the Human Gastrointestinal Tract
Authors
Keywords
-
Journal
Frontiers in Microbiology
Volume 7, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2016-06-22
DOI
10.3389/fmicb.2016.00884
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- The GyrA encoded gene: A pertinent marker for the phylogenetic revision of Helicobacter genus
- (2016) Armelle Ménard et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
- (2015) Dongwan D. Kang et al. PeerJ
- VizBin - an application for reference-independent visualization and human-augmented binning of metagenomic data
- (2015) Cedric C Laczny et al. Microbiome
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- A Phylogenomic View of Ecological Specialization in the Lachnospiraceae, a Family of Digestive Tract-Associated Bacteria
- (2014) Conor J. Meehan et al. Genome Biology and Evolution
- An Expanded Genomic Representation of the Phylum Cyanobacteria
- (2014) Rochelle M. Soo et al. Genome Biology and Evolution
- Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
- (2014) H Bjørn Nielsen et al. NATURE BIOTECHNOLOGY
- Binning metagenomic contigs by coverage and composition
- (2014) Johannes Alneberg et al. NATURE METHODS
- Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage
- (2014) Emilie E. L. Muller et al. Nature Communications
- Alignment-free Visualization of Metagenomic Data by Nonlinear Dimension Reduction
- (2014) Cedric C. Laczny et al. Scientific Reports
- MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
- (2014) Yu-Wei Wu et al. Microbiome
- rpoB gene as a novel molecular marker to infer phylogeny in Planctomycetales
- (2013) Joana Bondoso et al. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
- Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
- (2013) Mads Albertsen et al. NATURE BIOTECHNOLOGY
- The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
- (2013) Ross Overbeek et al. NUCLEIC ACIDS RESEARCH
- PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes
- (2013) Nicola Segata et al. Nature Communications
- The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria
- (2013) Sara C Di Rienzi et al. eLife
- Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2
- (2012) Martin Wu et al. BIOINFORMATICS
- Gene and translation initiation site prediction in metagenomic sequences
- (2012) Doug Hyatt et al. BIOINFORMATICS
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
- (2012) Y. Peng et al. BIOINFORMATICS
- Microbial culturomics: paradigm shift in the human gut microbiome study
- (2012) J.-C. Lagier et al. CLINICAL MICROBIOLOGY AND INFECTION
- Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization
- (2012) I. Sharon et al. GENOME RESEARCH
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- A framework for human microbiome research
- (2012) NATURE
- EvolView, an online tool for visualizing, annotating and managing phylogenetic trees
- (2012) Huangkai Zhang et al. NUCLEIC ACIDS RESEARCH
- MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit
- (2012) Jens Roat Kultima et al. PLoS One
- Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage
- (2011) Chris L Dupont et al. ISME Journal
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- A human gut microbial gene catalogue established by metagenomic sequencing
- (2010) Junjie Qin et al. NATURE
- New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
- (2010) Stéphane Guindon et al. SYSTEMATIC BIOLOGY
- SOAP2: an improved ultrafast tool for short read alignment
- (2009) R. Li et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Three new RelE-homologous mRNA interferases ofEscherichia colidifferentially induced by environmental stresses
- (2009) Mikkel Christensen-Dalsgaard et al. MOLECULAR MICROBIOLOGY
- Community-wide analysis of microbial genome sequence signatures
- (2009) Gregory J Dick et al. GENOME BIOLOGY
- The RAST Server: Rapid Annotations using Subsystems Technology
- (2008) Ramy K Aziz et al. BMC GENOMICS
- A Bioinformatician's Guide to Metagenomics
- (2008) V. Kunin et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Phylogeny.fr: robust phylogenetic analysis for the non-specialist
- (2008) A. Dereeper et al. NUCLEIC ACIDS RESEARCH
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More