Phylogenomic analysis supports the ancestral presence of LPS-outer membranes in the Firmicutes
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Title
Phylogenomic analysis supports the ancestral presence of LPS-outer membranes in the Firmicutes
Authors
Keywords
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Journal
eLife
Volume 5, Issue -, Pages -
Publisher
eLife Sciences Organisation, Ltd.
Online
2016-09-01
DOI
10.7554/elife.14589
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Note: Only part of the references are listed.- Osteomyelitis caused by Veillonella species: Case report and review of the literature
- (2016) Jun Hirai et al. JOURNAL OF INFECTION AND CHEMOTHERAPY
- Computing the Internode Certainty and Related Measures from Partial Gene Trees
- (2016) Kassian Kobert et al. MOLECULAR BIOLOGY AND EVOLUTION
- Evolution of the Translocation and Assembly Module (TAM)
- (2015) Eva Heinz et al. Genome Biology and Evolution
- Evolutionary relationships of completely sequenced Clostridia species and close relatives
- (2015) Takashi Kunisawa INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- A YadA-like autotransporter, Hag1 inVeillonella atypicais a multivalent hemagglutinin involved in adherence to oral streptococci,Porphyromonas gingivalis, and human oral buccal cells
- (2015) P. Zhou et al. Molecular Oral Microbiology
- The Pfam protein families database: towards a more sustainable future
- (2015) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Early infancy microbial and metabolic alterations affect risk of childhood asthma
- (2015) Marie-Claire Arrieta et al. Science Translational Medicine
- The Structure and Regulation of Flagella inBacillus subtilis
- (2014) Sampriti Mukherjee et al. Annual Review of Genetics
- Comparative proteome analysis of Acidaminococcus intestini supports a relationship between outer membrane biogenesis in Negativicutes and Proteobacteria
- (2014) Chantal Campbell et al. ARCHIVES OF MICROBIOLOGY
- Secretion of Bacterial Lipoproteins: Through the Cytoplasmic Membrane, the Periplasm and Beyond
- (2014) Wolfram R. Zückert BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH
- Empyema caused by Anaeroglobus geminates, a case report with literature review
- (2014) C.-H. Wang et al. INFECTION
- Assembly of Lipopolysaccharide inEscherichia coliRequires the Essential LapB Heat Shock Protein
- (2014) Gracjana Klein et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- The Lipopolysaccharide Export Pathway in Escherichia coli: Structure, Organization and Regulated Assembly of the Lpt Machinery
- (2014) Alessandra Polissi et al. Marine Drugs
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- CDD: NCBI's conserved domain database
- (2014) Aron Marchler-Bauer et al. NUCLEIC ACIDS RESEARCH
- A comprehensive analysis of the Omp85/TpsB protein superfamily structural diversity, taxonomic occurrence, and evolution
- (2014) Eva Heinz et al. Frontiers in Microbiology
- Assembly of β-barrel proteins into bacterial outer membranes
- (2013) Joel Selkrig et al. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH
- SyntTax: a web server linking synteny to prokaryotic taxonomy
- (2013) Jacques Oberto BMC BIOINFORMATICS
- A genomic update on clostridial phylogeny: Gram-negative spore formers and other misplaced clostridia
- (2013) Natalya Yutin et al. ENVIRONMENTAL MICROBIOLOGY
- Diversity of human small intestinalStreptococcusandVeillonellapopulations
- (2013) Bartholomeus van den Bogert et al. FEMS MICROBIOLOGY ECOLOGY
- Genomes of the class Erysipelotrichia clarify the firmicute origin of the class Mollicutes
- (2013) J. J. Davis et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Type IV Pili in Gram-Positive Bacteria
- (2013) S. Melville et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Evidence for glycoprotein transport into complex plastids
- (2013) M. Peschke et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Bacterial lipids: Metabolism and membrane homeostasis
- (2013) Joshua B. Parsons et al. PROGRESS IN LIPID RESEARCH
- Veillonella, Firmicutes: Microbes disguised as Gram negatives
- (2013) Tammi Vesth et al. Standards in Genomic Sciences
- L-form bacteria, cell walls and the origins of life
- (2013) J. Errington Open Biology
- Synthesis of lipopolysaccharide O-antigens by ABC transporter-dependent pathways
- (2012) Laura K. Greenfield et al. CARBOHYDRATE RESEARCH
- Discovery of an archetypal protein transport system in bacterial outer membranes
- (2012) Joel Selkrig et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Evolution of the β-barrel assembly machinery
- (2012) Chaille T. Webb et al. TRENDS IN MICROBIOLOGY
- A phylum level analysis reveals lipoprotein biosynthesis to be a fundamental property of bacteria
- (2012) Iain C. Sutcliffe et al. Protein & Cell
- Origin of diderm (Gram-negative) bacteria: antibiotic selection pressure rather than endosymbiosis likely led to the evolution of bacterial cells with two membranes
- (2011) Radhey S. Gupta ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
- Easyfig: a genome comparison visualizer
- (2011) M. J. Sullivan et al. BIOINFORMATICS
- ProtTest 3: fast selection of best-fit models of protein evolution
- (2011) Diego Darriba et al. BIOINFORMATICS
- Peptidoglycan Remodeling and Conversion of an Inner Membrane into an Outer Membrane during Sporulation
- (2011) Elitza I. Tocheva et al. CELL
- Fuchsiella alkaliacetigena gen. nov., sp. nov., an alkaliphilic, lithoautotrophic homoacetogen from a soda lake
- (2011) T. N. Zhilina et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Distinct and complex bacterial profiles in human periodontitis and health revealed by 16S pyrosequencing
- (2011) Ann L Griffen et al. ISME Journal
- Cultivable Anaerobic Microbiota of Severe Early Childhood Caries
- (2011) A. C. R. Tanner et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Bacterial outer membrane evolution via sporulation?
- (2011) Waldemar Vollmer Nature Chemical Biology
- Lipoprotein Sorting in Bacteria
- (2010) Suguru Okuda et al. Annual Review of Microbiology
- An Alternative Route for UDP-Diacylglucosamine Hydrolysis in Bacterial Lipid A Biosynthesis
- (2010) Louis E. Metzger et al. BIOCHEMISTRY
- PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
- (2010) Nancy Y. Yu et al. BIOINFORMATICS
- Hidden Markov model speed heuristic and iterative HMM search procedure
- (2010) L Steven Johnson et al. BMC BIOINFORMATICS
- Evolution of the Kdo2-lipid A biosynthesis in bacteria
- (2010) Stephen O Opiyo et al. BMC EVOLUTIONARY BIOLOGY
- BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
- (2010) Alexis Criscuolo et al. BMC EVOLUTIONARY BIOLOGY
- Cadaverine Covalently Linked to Peptidoglycan Is Required for Interaction between the Peptidoglycan and the Periplasm-Exposed S-Layer-Homologous Domain of Major Outer Membrane Protein Mep45 in Selenomonas ruminantium
- (2010) S. Kojima et al. JOURNAL OF BACTERIOLOGY
- New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
- (2010) Stéphane Guindon et al. SYSTEMATIC BIOLOGY
- A phylum level perspective on bacterial cell envelope architecture
- (2010) Iain C. Sutcliffe TRENDS IN MICROBIOLOGY
- The Bacterial Cell Envelope
- (2010) T. J. Silhavy et al. Cold Spring Harbor Perspectives in Biology
- Physical and genetic characterization of an outer-membrane protein (OmpM1) containing an N-terminal S-layer-like homology domain from the phylogenetically Gram-positive gut anaerobe Mitsuokella multacida
- (2009) M.L. Kalmokoff et al. ANAEROBE
- PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating
- (2009) Nicolas Lartillot et al. BIOINFORMATICS
- Negativicoccus succinicivorans gen. nov., sp. nov., isolated from human clinical samples, emended description of the family Veillonellaceae and description of Negativicutes classis nov., Selenomonadales ord. nov. and Acidaminococcaceae fam. nov. in the bacterial phylum Firmicutes
- (2009) H. Marchandin et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building
- (2009) M. Gouy et al. MOLECULAR BIOLOGY AND EVOLUTION
- Evidence for an early prokaryotic endosymbiosis
- (2009) James A. Lake NATURE
- Transport of lipopolysaccharide across the cell envelope: the long road of discovery
- (2009) Natividad Ruiz et al. NATURE REVIEWS MICROBIOLOGY
- Genome Analysis of the Anaerobic Thermohalophilic Bacterium Halothermothrix orenii
- (2009) Konstantinos Mavromatis et al. PLoS One
- Megamonas rupellensis sp. nov., an anaerobe isolated from the caecum of a duck
- (2008) R. Chevrot et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- An Improved General Amino Acid Replacement Matrix
- (2008) S. Q. Le et al. MOLECULAR BIOLOGY AND EVOLUTION
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