Small RNA-Based Antiviral Defense in the Phytopathogenic Fungus Colletotrichum higginsianum

Identification and sequence determination of a novel double-stranded RNA mycovirus from the entomopathogenic fungus Beauveria bassiana

(2015) Ioly Kotta-Loizou et al.   ARCHIVES OF VIROLOGY

Molecular characterization of a novel amalgavirus from the entomopathogenic fungus Beauveria bassiana

(2015) Igor Koloniuk et al.   ARCHIVES OF VIROLOGY

From guide to target: molecular insights into eukaryotic RNA-interference machinery

(2015) Jonathan J Ipsaro et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

A novel mycovirus identified from the rice false smut fungus Ustilaginoidea virens

(2015) Hong Jian Zhu et al.   VIRUS GENES

From guide to target: molecular insights into eukaryotic RNA-interference machinery

(2015) Jonathan J Ipsaro et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

New Insights into Mycoviruses and Exploration for the Biological Control of Crop Fungal Diseases

(2014) Jiatao Xie et al.   Annual Review of Phytopathology

The Diversity, Biogenesis, and Activities of Endogenous Silencing Small RNAs inArabidopsis

(2014) Nicolas G. Bologna et al.   Annual Review of Plant Biology

Large scale comparison of non-human sequences in human sequencing data

(2014) Hongseok Tae et al.   GENOMICS

New Generation of Artificial MicroRNA and Synthetic Trans-Acting Small Interfering RNA Vectors for Efficient Gene Silencing in Arabidopsis

(2014) A. Carbonell et al.   PLANT PHYSIOLOGY

Characterizing the Roles of Cryphonectria parasitica RNA-Dependent RNA Polymerase-Like Genes in Antiviral Defense, Viral Recombination and Transposon Transcript Accumulation

(2014) Dong-Xiu Zhang et al.   PLoS One

Fungal negative-stranded RNA virus that is related to bornaviruses and nyaviruses

(2014) L. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Detection and characterization of a novel Gammapartitivirus in the phytopathogenic fungus Colletotrichum acutatum strain HNZJ001

(2014) Jie Zhong et al.   VIRUS RESEARCH

Viral pathogen discovery

(2013) Charles Y Chiu   CURRENT OPINION IN MICROBIOLOGY

Biological properties and expression strategy of rosellinia necatrix megabirnavirus 1 analysed in an experimental host, Cryphonectria parasitica

(2013) L. Salaipeth et al.   JOURNAL OF GENERAL VIROLOGY

A Novel Victorivirus from a Phytopathogenic Fungus, Rosellinia necatrix, Is Infectious as Particles and Targeted by RNA Silencing

(2013) S. Chiba et al.   JOURNAL OF VIROLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Defining the RGG/RG Motif

(2013) Palaniraja Thandapani et al.   MOLECULAR CELL

The RNAi machinery regulates growth and development in the filamentous fungusTrichoderma atroviride

(2013) Nohemi Carreras-Villaseñor et al.   MOLECULAR MICROBIOLOGY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

A Single Argonaute Gene Participates in Exogenous and Endogenous RNAi and Controls Cellular Functions in the Basal Fungus Mucor circinelloides

(2013) María Cervantes et al.   PLoS One

Fungal Small RNAs Suppress Plant Immunity by Hijacking Host RNA Interference Pathways

(2013) Arne Weiberg et al.   SCIENCE

Three-dimensional Structure of Victorivirus HvV190S Suggests Coat Proteins in Most Totiviruses Share a Conserved Core

(2013) Sarah E. Dunn et al.   PLoS Pathogens

Loss and Retention of RNA Interference in Fungi and Parasites

(2013) Francisco E. Nicolás et al.   PLoS Pathogens

Evolutionary genomics of mycovirus-related dsRNA viruses reveals cross-family horizontal gene transfer and evolution of diverse viral lineages

(2012) Huiquan Liu et al.   BMC EVOLUTIONARY BIOLOGY

The Structure of Human Argonaute-2 in Complex with miR-20a

(2012) Elad Elkayam et al.   CELL

Characterization of three Colletotrichum acutatum isolates from Capsicum spp.

(2012) Chein-Yao Liao et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Effects of Defective Interfering RNA on Symptom Induction by, and Replication of, a Novel Partitivirus from a Phytopathogenic Fungus, Rosellinia necatrix

(2012) S. Chiba et al.   JOURNAL OF VIROLOGY

Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses

(2012) Richard J O'Connell et al.   NATURE GENETICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Functional Analysis of Three Arabidopsis ARGONAUTES Using Slicer-Defective Mutants

(2012) A. Carbonell et al.   PLANT CELL

The Crystal Structure of Human Argonaute2

(2012) N. T. Schirle et al.   SCIENCE

Colletotrichum – current status and future directions

(2012) P.F. Cannon et al.   STUDIES IN MYCOLOGY

Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks

(2012) Daniel H. Huson et al.   SYSTEMATIC BIOLOGY

Detection of isometric, dsRNA-containing viral particles in Colletotrichum gloeosporioides isolated from cashew tree

(2012) Lívio C. de Figueirêdo et al.   Tropical Plant Pathology

RNA Interference in Fungi: Pathways, Functions, and Applications

(2011) Yunkun Dang et al.   EUKARYOTIC CELL

Gene silencing by microRNAs: contributions of translational repression and mRNA decay

(2011) Eric Huntzinger et al.   NATURE REVIEWS GENETICS

The good viruses: viral mutualistic symbioses

(2011) Marilyn J. Roossinck   NATURE REVIEWS MICROBIOLOGY

The 21-Nucleotide, but Not 22-Nucleotide, Viral Secondary Small Interfering RNAs Direct Potent Antiviral Defense by Two Cooperative Argonautes inArabidopsis thaliana

(2011) Xian-Bing Wang et al.   PLANT CELL

A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq

(2011) Lin Wang et al.   PLoS One

Candida albicans Dicer (CaDcr1) is required for efficient ribosomal and spliceosomal RNA maturation

(2011) D. A. Bernstein et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Compatibility with Killer Explains the Rise of RNAi-Deficient Fungi

(2011) I. A. Drinnenberg et al.   SCIENCE

A novel monopartite dsRNA virus from rhododendron

(2010) S. Sabanadzovic et al.   ARCHIVES OF VIROLOGY

How significant is a protein structure similarity with TM-score = 0.5?

(2010) Jinrui Xu et al.   BIOINFORMATICS

Backbone Trace of Partitivirus Capsid Protein from Electron Cryomicroscopy and Homology Modeling

(2010) Jinghua Tang et al.   BIOPHYSICAL JOURNAL

Challenges of sequencing human genomes

(2010) D. C. Koboldt et al.   BRIEFINGS IN BIOINFORMATICS

RNA interference pathways in filamentous fungi

(2010) Liande Li et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Characterizing the role of RNA silencing components in Cryptococcus neoformans

(2010) Guilhem Janbon et al.   FUNGAL GENETICS AND BIOLOGY

I-TASSER: a unified platform for automated protein structure and function prediction

(2010) Ambrish Roy et al.   Nature Protocols

Small RNA sorting: matchmaking for Argonautes

(2010) Benjamin Czech et al.   NATURE REVIEWS GENETICS

Arabidopsis RNA-Dependent RNA Polymerases and Dicer-Like Proteins in Antiviral Defense and Small Interfering RNA Biogenesis during Turnip Mosaic Virus Infection

(2010) H. Garcia-Ruiz et al.   PLANT CELL

A geminivirus-related DNA mycovirus that confers hypovirulence to a plant pathogenic fungus

(2010) X. Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deep sequencing analysis of viruses infecting grapevines: Virome of a vineyard

(2010) Beatrix Coetzee et al.   VIROLOGY

Blueberry latent virus: An amalgam of the Partitiviridae and Totiviridae

(2010) Robert R. Martin et al.   VIRUS RESEARCH

A Complex Small RNA Repertoire Is Generated by a Plant/Fungal-Like Machinery and Effected by a Metazoan-Like Argonaute in the Single-Cell Human Parasite Toxoplasma gondii

(2010) Laurence Braun et al.   PLoS Pathogens

Viruses of Plant Pathogenic Fungi

(2009) Said A. Ghabrial et al.   Annual Review of Phytopathology

Origins and Mechanisms of miRNAs and siRNAs

(2009) Richard W. Carthew et al.   CELL

A SingledicerGene Is Required for Efficient Gene Silencing Associated with Two Classes of Small Antisense RNAs inMucor circinelloides

(2009) Juan P. de Haro et al.   EUKARYOTIC CELL

Biogenesis of small RNAs in animals

(2009) V. Narry Kim et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Atomic structure reveals the unique capsid organization of a dsRNA virus

(2009) J. Pan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A single Argonaute gene is required for induction of RNA silencing antiviral defense and promotes viral RNA recombination

(2009) Q. Sun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comprehensive analysis of the Brassica juncea root proteome in response to cadmium exposure by complementary proteomic approaches

(2009) Sophie Alvarez et al.   PROTEOMICS

RNAi in Budding Yeast

(2009) I. A. Drinnenberg et al.   SCIENCE

Deep-sequencing of plant viral small RNAs reveals effective and widespread targeting of viral genomes

(2009) Livia Donaire et al.   VIROLOGY

Significantly low level of small RNA accumulation derived from an encapsidated mycovirus with dsRNA genome

(2009) Misako Himeno et al.   VIROLOGY

Southern tomato virus: The link between the families Totiviridae and Partitiviridae

(2009) Sead Sabanadzovic et al.   VIRUS RESEARCH

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

I-TASSER server for protein 3D structure prediction

(2008) Yang Zhang   BMC BIOINFORMATICS

Diversification of the Core RNA Interference Machinery in Chlamydomonas reinhardtii and the Role of DCL1 in Transposon Silencing

(2008) J. A. Casas-Mollano et al.   GENETICS

Characterization of Hypovirus-Derived Small RNAs Generated in the Chestnut Blight Fungus by an Inducible DCL-2-Dependent Pathway

(2008) X. Zhang et al.   JOURNAL OF VIROLOGY

Mycoviruses of filamentous fungi and their relevance to plant pathology

(2008) MICHAEL N. PEARSON et al.   MOLECULAR PLANT PATHOLOGY

Clonal Integration of a Polyomavirus in Human Merkel Cell Carcinoma

(2008) H. Feng et al.   SCIENCE