Sex-Biased Transcriptome of Schistosoma mansoni: Host-Parasite Interaction, Genetic Determinants and Epigenetic Regulators Are Associated with Sexual Differentiation

MicroRNAs Are Involved in the Regulation of Ovary Development in the Pathogenic Blood Fluke Schistosoma japonicum

(2016) Lihui Zhu et al.   PLoS Pathogens

Schistosomiasis and its treatment

(2015) Conor R Caffrey   Future Medicinal Chemistry

Sex comb on midleg (Scm) is a functional link between PcG-repressive complexes inDrosophila

(2015) Hyuckjoon Kang et al.   GENES & DEVELOPMENT

The role of the transformer gene in sex determination and reproduction in the tephritid fruit fly, Bactrocera dorsalis (Hendel)

(2015) Wei Peng et al.   GENETICA

Accelerated Evolution of Schistosome Genes Coding for Proteins Located at the Host–Parasite Interface

(2015) Gisele S. Philippsen et al.   Genome Biology and Evolution

Ensembl Genomes 2016: more genomes, more complexity

(2015) Paul Julian Kersey et al.   NUCLEIC ACIDS RESEARCH

Circulating miRNAs: Potential Novel Biomarkers for Hepatopathology Progression and Diagnosis of Schistosomiasis Japonica in Two Murine Models

(2015) Pengfei Cai et al.   PLoS Neglected Tropical Diseases

Schistosoma mansoni Egg, Adult Male and Female Comparative Gene Expression Analysis and Identification of Novel Genes by RNA-Seq

(2015) Letícia Anderson et al.   PLoS Neglected Tropical Diseases

The Epigenome of Schistosoma mansoni Provides Insight about How Cercariae Poise Transcription until Infection

(2015) David Roquis et al.   PLoS Neglected Tropical Diseases

Excreted/secreted Schistosoma mansoni venom allergen-like 9 (SmVAL9) modulates host extracellular matrix remodelling gene expression

(2014) Timothy P. Yoshino et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

The InterPro protein families database: the classification resource after 15 years

(2014) Alex Mitchell et al.   NUCLEIC ACIDS RESEARCH

Novel expression profiles of microRNAs suggest that specific miRNAs regulate gene expression for the sexual maturation of female Schistosoma japonicum after pairing

(2014) Jun Sun et al.   Parasites & Vectors

Transcriptome Analyses of Inhibitor-treated Schistosome Females Provide Evidence for Cooperating Src-kinase and TGFβ Receptor Pathways Controlling Mitosis and Eggshell Formation

(2014) Christin Buro et al.   PLoS Pathogens

Venus Kinase Receptors Control Reproduction in the Platyhelminth Parasite Schistosoma mansoni

(2014) Mathieu Vanderstraete et al.   PLoS Pathogens

Gonad RNA-specific qRT-PCR analyses identify genes with potential functions in schistosome reproduction such as SmFz1 and SmFGFRs

(2014) Steffen Hahnel et al.   Frontiers in Genetics

Receptor tyrosine kinases and schistosome reproduction: new targets for chemotherapy

(2014) Marion Morel et al.   Frontiers in Genetics

Venus Kinase Receptors: Prospects in Signaling and Biological Functions of These Invertebrate Kinases

(2014) Colette Dissous et al.   Frontiers in Endocrinology

Sex-specific repression of dachshund is required for Drosophila sex comb development

(2013) Joel Atallah et al.   DEVELOPMENTAL BIOLOGY

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Dosage Compensation via Transposable Element Mediated Rewiring of a Regulatory Network

(2013) C. E. Ellison et al.   SCIENCE

Evolutionary Change within a Bipotential Switch Shaped the Sperm/Oocyte Decision in Hermaphroditic Nematodes

(2013) Yiqing Guo et al.   PLoS Genetics

Sex-Biased Expression of MicroRNAs in Schistosoma mansoni

(2013) Antonio Marco et al.   PLoS Neglected Tropical Diseases

Combinatory Microarray and SuperSAGE Analyses Identify Pairing-Dependently Transcribed Genes in Schistosoma mansoni Males, Including Follistatin

(2013) Silke Leutner et al.   PLoS Neglected Tropical Diseases

Functional genomic characterization of neoblast-like stem cells in larval Schistosoma mansoni

(2013) Bo Wang et al.   eLife

Whole-genome in-silico subtractive hybridization (WISH) - using massive sequencing for the identification of unique and repetitive sex-specific sequences: the example of Schistosoma mansoni

(2012) Julien Portela et al.   BMC GENOMICS

Bivalent histone modifications in early embryogenesis

(2012) Nadine L Vastenhouw et al.   CURRENT OPINION IN CELL BIOLOGY

PRC2 during vertebrate organogenesis: A complex in transition

(2012) Issam Aldiri et al.   DEVELOPMENTAL BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Morphological and morphometric study of cercariae and adult worms of Schistosoma mansoni (SLM strain) isolated from infected mice

(2012) A. S. A. Pereira et al.   PARASITOLOGY RESEARCH

SmSak, the Second Polo-Like Kinase of the Helminth Parasite Schistosoma mansoni: Conserved and Unexpected Roles in Meiosis

(2012) Thavy Long et al.   PLoS One

Discovery of Platyhelminth-Specific α/β-Integrin Families and Evidence for Their Role in Reproduction in Schistosoma mansoni

(2012) Svenja Beckmann et al.   PLoS One

A Systematically Improved High Quality Genome and Transcriptome of the Human Blood Fluke Schistosoma mansoni

(2012) Anna V. Protasio et al.   PLoS Neglected Tropical Diseases

Chromatin structure changes around satellite repeats on the Schistosoma mansoni female sex chromosome suggest a possible mechanism for sex chromosome emergence

(2012) Julie MJ Lepesant et al.   GENOME BIOLOGY

Schistosoma mansoni polo-like kinases and their function in control of mitosis and parasite reproduction

(2011) Colette Dissous et al.   ANAIS DA ACADEMIA BRASILEIRA DE CIENCIAS

Signalling pathways and the host-parasite relationship: Putative targets for control interventions against schistosomiasis

(2011) Hong You et al.   BIOESSAYS

Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data

(2011) Sonja Althammer et al.   BIOINFORMATICS

PeakRanger: A cloud-enabled peak caller for ChIP-seq data

(2011) Xin Feng et al.   BMC BIOINFORMATICS

Identification of Schistosoma mansoni microRNAs

(2011) Mariana C Simões et al.   BMC GENOMICS

Genome Sequencing of Mouse Induced Pluripotent Stem Cells Reveals Retroelement Stability and Infrequent DNA Rearrangement during Reprogramming

(2011) Aaron R. Quinlan et al.   Cell Stem Cell

Genome-wide identification of novel microRNAs and their target genes in the human parasite Schistosoma mansoni

(2011) Matheus de Souza Gomes et al.   GENOMICS

RNA sequencing reveals two major classes of gene expression levels in metazoan cells

(2011) D. Hebenstreit et al.   Molecular Systems Biology

GeneDB--an annotation database for pathogens

(2011) F. J. Logan-Klumpler et al.   NUCLEIC ACIDS RESEARCH

Genomes and geography: genomic insights into the evolution and phylogeography of the genus Schistosoma

(2011) Scott P Lawton et al.   Parasites & Vectors

Gene Expression Patterns in Larval Schistosoma mansoni Associated with Infection of the Mammalian Host

(2011) Sophia J. Parker-Manuel et al.   PLoS Neglected Tropical Diseases

Manipulation of FASTQ data with Galaxy

(2010) D. Blankenberg et al.   BIOINFORMATICS

Protein variation in blood-dwelling schistosome worms generated by differential splicing of micro-exon gene transcripts

(2010) R. DeMarco et al.   GENOME RESEARCH

Schistosoma mansoni Polo-like kinase 1: A mitotic kinase with key functions in parasite reproduction☆

(2010) Thavy Long et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Vertebrate host protective immunity drives genetic diversity and antigenic polymorphism in Schistosoma mansoni

(2010) S. BELTRAN et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Schistosoma mansoni: signal transduction processes during the development of the reproductive organs

(2010) S. BECKMANN et al.   PARASITOLOGY

Genome-Wide Analyses Reveal a Role for Peptide Hormones in Planarian Germline Development

(2010) James J. Collins et al.   PLOS BIOLOGY

Transcriptional Changes in Schistosoma mansoni during Early Schistosomula Development and in the Presence of Erythrocytes

(2010) Geoffrey N. Gobert et al.   PLoS Neglected Tropical Diseases

The Syk Kinase SmTK4 of Schistosoma mansoni Is Involved in the Regulation of Spermatogenesis and Oogenesis

(2010) Svenja Beckmann et al.   PLoS Pathogens

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Signal transduction regulates schistosome reproductive biology

(2009) Philip T LoVerde et al.   CURRENT OPINION IN MICROBIOLOGY

Discovery of multiple neuropeptide families in the phylum Platyhelminthes

(2009) Paul McVeigh et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Transcriptional profiles of adult male and female Schistosoma japonicum in response to insulin reveal increased expression of genes involved in growth and development

(2009) Hong You et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Native chromatin immunoprecipitation (N-ChIP) and ChIP-Seq of Schistosoma mansoni: Critical experimental parameters

(2009) Céline Cosseau et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

The saga of schistosome migration and attrition

(2009) R. A. WILSON   PARASITOLOGY

A New Family of Receptor Tyrosine Kinases with a Venus Flytrap Binding Domain in Insects and Other Invertebrates Activated by Aminoacids

(2009) Arnaud Ahier et al.   PLoS One

Male-biased sex ratio: why and what consequences for the genus Schistosoma?

(2009) Sophie Beltran et al.   TRENDS IN PARASITOLOGY

Identification of the Schistosoma mansoni TNF-Alpha Receptor Gene and the Effect of Human TNF-Alpha on the Parasite Gene Expression Profile

(2009) Katia C. Oliveira et al.   PLoS Neglected Tropical Diseases

Genomic linkage map of the human blood fluke Schistosoma mansoni

(2009) Charles D Criscione et al.   GENOME BIOLOGY

Developmentally regulated expression, alternative splicing and distinct sub-groupings in members of the Schistosoma mansoni venom allergen-like (SmVAL) gene family

(2008) Iain W Chalmers et al.   BMC GENOMICS

Current Status of Vaccines for Schistosomiasis

(2008) D. P. McManus et al.   CLINICAL MICROBIOLOGY REVIEWS

Schistosoma japonicum: Inhibition of Mago nashi gene expression by shRNA-mediated RNA interference

(2008) Zhi-rong Zhao et al.   EXPERIMENTAL PARASITOLOGY

NCBI BLAST: a better web interface

(2008) M. Johnson et al.   NUCLEIC ACIDS RESEARCH

Use of Genomic DNA as an Indirect Reference for Identifying Gender-Associated Transcripts in Morphologically Identical, but Chromosomally Distinct, Schistosoma mansoni Cercariae

(2008) Jennifer M. Fitzpatrick et al.   PLoS Neglected Tropical Diseases