Dynamical Allocation of Cellular Resources as an Optimal Control Problem: Novel Insights into Microbial Growth Strategies
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Dynamical Allocation of Cellular Resources as an Optimal Control Problem: Novel Insights into Microbial Growth Strategies
Authors
Keywords
Gene expression, Enzyme metabolism, Ribosomes, Protein metabolism, Cell metabolism, Sensory physiology, Macromolecules, Control theory
Journal
PLoS Computational Biology
Volume 12, Issue 3, Pages e1004802
Publisher
Public Library of Science (PLoS)
Online
2016-03-10
DOI
10.1371/journal.pcbi.1004802
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Engineering metabolism through dynamic control
- (2015) Naveen Venayak et al. CURRENT OPINION IN BIOTECHNOLOGY
- Diversity in (p)ppGpp metabolism and effectors
- (2015) Kuanqing Liu et al. CURRENT OPINION IN MICROBIOLOGY
- How fast-growing bacteria robustly tune their ribosome concentration to approximate growth-rate maximization
- (2015) Evert Bosdriesz et al. FEBS Journal
- Many Means to a Common End: the Intricacies of (p)ppGpp Metabolism and Its Control of Bacterial Homeostasis
- (2015) Anthony O. Gaca et al. JOURNAL OF BACTERIOLOGY
- Dynamic optimization of metabolic networks coupled with gene expression
- (2015) Steffen Waldherr et al. JOURNAL OF THEORETICAL BIOLOGY
- A synthetic growth switch based on controlled expression of RNA polymerase
- (2015) J. Izard et al. Molecular Systems Biology
- Recent functional insights into the role of (p)ppGpp in bacterial physiology
- (2015) Vasili Hauryliuk et al. NATURE REVIEWS MICROBIOLOGY
- Microfluidics: reframing biological enquiry
- (2015) Todd A. Duncombe et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Mechanistic links between cellular trade-offs, gene expression, and growth
- (2015) Andrea Y. Weiße et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Understanding carbon catabolite repression in Escherichia coli using quantitative models
- (2015) A. Kremling et al. TRENDS IN MICROBIOLOGY
- The unexhausted potential of E. coli
- (2015) Zachary D Blount eLife
- Molecular physiology of the dynamic regulation of carbon catabolite repression in Escherichia coli
- (2014) O. Borirak et al. MICROBIOLOGY-SGM
- Emergence of robust growth laws from optimal regulation of ribosome synthesis
- (2014) M. Scott et al. Molecular Systems Biology
- Coordination of microbial metabolism
- (2014) Victor Chubukov et al. NATURE REVIEWS MICROBIOLOGY
- Improving fatty acids production by engineering dynamic pathway regulation and metabolic control
- (2014) P. Xu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Bacterial growth laws reflect the evolutionary importance of energy efficiency
- (2014) Arijit Maitra et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Not Just a Theory—The Utility of Mathematical Models in Evolutionary Biology
- (2014) Maria R. Servedio et al. PLOS BIOLOGY
- Promoter activity dynamics in the lag phase of Escherichia coli
- (2013) Daniel Madar et al. BMC Systems Biology
- Engineering dynamic pathway regulation using stress-response promoters
- (2013) Robert H Dahl et al. NATURE BIOTECHNOLOGY
- Optimal control of gene expression for fast proteome adaptation to environmental change
- (2013) M. Y. Pavlov et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Molecular crowding limits translation and cell growth
- (2013) S. Klumpp et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Medium-dependent control of the bacterial growth rate
- (2012) Måns Ehrenberg et al. BIOCHIMIE
- Optimality in the Development of Intestinal Crypts
- (2012) Shalev Itzkovitz et al. CELL
- Superresolution imaging of ribosomes and RNA polymerase in live Escherichia coli cells
- (2012) Somenath Bakshi et al. MOLECULAR MICROBIOLOGY
- ppGpp: magic beyond RNA polymerase
- (2012) Zachary D. Dalebroux et al. NATURE REVIEWS MICROBIOLOGY
- EcoCyc: fusing model organism databases with systems biology
- (2012) Ingrid M. Keseler et al. NUCLEIC ACIDS RESEARCH
- Multidimensional Optimality of Microbial Metabolism
- (2012) R. Schuetz et al. SCIENCE
- Tradeoffs and Optimality in the Evolution of Gene Regulation
- (2011) Frank J. Poelwijk et al. CELL
- Bacterial growth laws and their applications
- (2011) Matthew Scott et al. CURRENT OPINION IN BIOTECHNOLOGY
- Measuring single-cell gene expression dynamics in bacteria using fluorescence time-lapse microscopy
- (2011) Jonathan W Young et al. Nature Protocols
- Single-molecule investigations of the stringent response machinery in living bacterial cells
- (2011) B. P. English et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Modelling the optimal timing in metabolic pathway activation—Use of Pontryagin's Maximum Principle and role of the Golden section
- (2010) Martin Bartl et al. BIOSYSTEMS
- Resource allocation problem in a two-sector economic model of special form
- (2010) Yu. N. Kiselev et al. DIFFERENTIAL EQUATIONS
- ppGpp is the major source of growth rate control in E. coli
- (2010) Katarzyna Potrykus et al. ENVIRONMENTAL MICROBIOLOGY
- Survival of Escherichia coli in the environment: fundamental and public health aspects
- (2010) Jan Dirk van Elsas et al. ISME Journal
- The trade-off between rate and yield in the design of microbial metabolism
- (2010) S. A. FRANK JOURNAL OF EVOLUTIONARY BIOLOGY
- Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale models
- (2010) Nathan E Lewis et al. Molecular Systems Biology
- Interdependence of Cell Growth and Gene Expression: Origins and Consequences
- (2010) M. Scott et al. SCIENCE
- Sequential Activation of Metabolic Pathways: a Dynamic Optimization Approach
- (2009) Diego A. Oyarzún et al. BULLETIN OF MATHEMATICAL BIOLOGY
- Shifts in growth strategies reflect tradeoffs in cellular economics
- (2009) Douwe Molenaar et al. Molecular Systems Biology
- (p)ppGpp: Still Magical?
- (2008) Katarzyna Potrykus et al. Annual Review of Microbiology
- The global, ppGpp-mediated stringent response to amino acid starvation in Escherichia coli
- (2008) Matthew F. Traxler et al. MOLECULAR MICROBIOLOGY
- Carbon catabolite repression in bacteria: many ways to make the most out of nutrients
- (2008) Boris Görke et al. NATURE REVIEWS MICROBIOLOGY
- Is maximization of molar yield in metabolic networks favoured by evolution?
- (2007) Stefan Schuster et al. JOURNAL OF THEORETICAL BIOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started