Integrative Analysis of miRNA and mRNA Profiles in Response to Ethylene in Rose Petals during Flower Opening

Genetics and genomics of flower initiation and development in roses

(2013) Mohammed Bendahmane et al.   JOURNAL OF EXPERIMENTAL BOTANY

Small RNA and transcriptome deep sequencing proffers insight into floral gene regulation in Rosa cultivars

(2012) Jungeun Kim et al.   BMC GENOMICS

Sculpting the maturation, softening and ethylene pathway: The influences of microRNAs on tomato fruits

(2012) Jinhua Zuo et al.   BMC GENOMICS

Transcriptome database resource and gene expression atlas for the rose

(2012) Annick Dubois et al.   BMC GENOMICS

Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs

(2012) Hong Zhu et al.   BMC PLANT BIOLOGY

Detecting adaptive evolution and functional divergence in aminocyclopropane-1-carboxylate synthase (ACS) gene family

(2012) Ti-Cao Zhang et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Identification and validation of potential conserved microRNAs and their targets in peach (Prunus persica)

(2012) Zhihong Gao et al.   MOLECULES AND CELLS

Studies ofPhyscomitrella patensreveal that ethylene-mediated submergence responses arose relatively early in land-plant evolution

(2012) Yuki Yasumura et al.   PLANT JOURNAL

Uncovering Small RNA-Mediated Responses to Cold Stress in a Wheat Thermosensitive Genic Male-Sterile Line by Deep Sequencing

(2012) Z. Tang et al.   PLANT PHYSIOLOGY

Apple miRNAs and tasiRNAs with novel regulatory networks

(2012) Rui Xia et al.   GENOME BIOLOGY

Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants

(2011) Basel Khraiwesh et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Discovery of barley miRNAs through deep sequencing of short reads

(2011) Andreas W Schreiber et al.   BMC GENOMICS

Computational identification of microRNAs in peach expressed sequence tags and validation of their precise sequences by miR-RACE

(2011) Yanping Zhang et al.   MOLECULAR BIOLOGY REPORTS

Massive Analysis of Rice Small RNAs: Mechanistic Implications of Regulated MicroRNAs and Variants for Differential Target RNA Cleavage

(2011) D.-H. Jeong et al.   PLANT CELL

Negative Regulation of Anthocyanin Biosynthesis inArabidopsisby a miR156-Targeted SPL Transcription Factor

(2011) Jin-Ying Gou et al.   PLANT CELL

Conservation and divergence in plant microRNAs

(2011) Matthew W. Jones-Rhoades   PLANT MOLECULAR BIOLOGY

Small RNA Profiling in Two Brassica napus Cultivars Identifies MicroRNAs with Oil Production- and Development-Correlated Expression and New Small RNA Classes

(2011) Y.-T. Zhao et al.   PLANT PHYSIOLOGY

Ethylene-responsive miRNAs in roots of Medicago truncatula identified by high-throughput sequencing at whole genome level

(2011) Lei Chen et al.   PLANT SCIENCE

High-Throughput Sequencing, Characterization and Detection of New and Conserved Cucumber miRNAs

(2011) Germán Martínez et al.   PLoS One

High-Throughput Sequencing of RNA Silencing-Associated Small RNAs in Olive (Olea europaea L.)

(2011) Livia Donaire et al.   PLoS One

Genomic Approach to Study Floral Development Genes in Rosa sp.

(2011) Annick Dubois et al.   PLoS One

The genome of woodland strawberry (Fragaria vesca)

(2010) Vladimir Shulaev et al.   NATURE GENETICS

Small RNA sorting: matchmaking for Argonautes

(2010) Benjamin Czech et al.   NATURE REVIEWS GENETICS

Small RNAs and Their Roles in Plant Development

(2009) Xuemei Chen   Annual Review of Cell and Developmental Biology

Roles of Plant Small RNAs in Biotic Stress Responses

(2009) Virginia Ruiz-Ferrer et al.   Annual Review of Plant Biology

High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera

(2009) Erica Mica et al.   BMC GENOMICS

Origin, Biogenesis, and Activity of Plant MicroRNAs

(2009) Olivier Voinnet   CELL

Exploring Complex Ornamental Genomes: The Rose as a Model Plant

(2009) Th. Debener et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Comparative characterization of the Arabidopsis subfamily a1 β-galactosidases

(2009) Dashzeveg Gantulga et al.   PHYTOCHEMISTRY

Trifurcate Feed-Forward Regulation of Age-Dependent Cell Death Involving miR164 in Arabidopsis

(2009) J. H. Kim et al.   SCIENCE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Sorting of Small RNAs into Arabidopsis Argonaute Complexes Is Directed by the 5′ Terminal Nucleotide

(2008) Shijun Mi et al.   CELL

Expression of ethylene biosynthetic and receptor genes in rose floral tissues during ethylene-enhanced flower opening

(2008) J. Xue et al.   JOURNAL OF EXPERIMENTAL BOTANY

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

Interplay of miR164,CUP-SHAPED COTYLEDONgenes andLATERAL SUPPRESSORcontrols axillary meristem formation inArabidopsis thaliana

(2008) Smita Raman et al.   PLANT JOURNAL

Rh-PIP2;1, a Rose Aquaporin Gene, Is Involved in Ethylene-Regulated Petal Expansion

(2008) N. Ma et al.   PLANT PHYSIOLOGY

Widespread Translational Inhibition by Plant miRNAs and siRNAs

(2008) P. Brodersen et al.   SCIENCE

Evolution of plant microRNAs and their targets

(2008) Michael J. Axtell et al.   TRENDS IN PLANT SCIENCE