Design principles for rapid folding of knotted DNA nanostructures

Circuit topology of self-interacting chains: implications for folding and unfolding dynamics

(2014) Andrew Mugler et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

A single-stranded architecture for cotranscriptional folding of RNA nanostructures

(2014) C. Geary et al.   SCIENCE

Circuit Topology of Proteins and Nucleic Acids

(2014) Alireza Mashaghi et al.   STRUCTURE

Folding single-stranded DNA to form the smallest 3D DNA triangular prism

(2013) Xiaojin He et al.   CHEMICAL COMMUNICATIONS

Design of a single-chain polypeptide tetrahedron assembled from coiled-coil segments

(2013) Helena Gradišar et al.   Nature Chemical Biology

Coarse-graining DNA for simulations of DNA nanotechnology

(2013) Jonathan P. K. Doye et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

PyKnot: a PyMOL tool for the discovery and analysis of knots in proteins

(2012) R. C. Lua   BIOINFORMATICS

The effect of topology on the structure and free energy landscape of DNA kissing complexes

(2012) Flavio Romano et al.   JOURNAL OF CHEMICAL PHYSICS

Sequence-dependent thermodynamics of a coarse-grained DNA model

(2012) Petr Šulc et al.   JOURNAL OF CHEMICAL PHYSICS

Complex shapes self-assembled from single-stranded DNA tiles

(2012) Bryan Wei et al.   NATURE

Conservation of complex knotting and slipknotting patterns in proteins

(2012) J. I. Sulkowska et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid Folding of DNA into Nanoscale Shapes at Constant Temperature

(2012) J.-P. J. Sobczak et al.   SCIENCE

Three-Dimensional Structures Self-Assembled from DNA Bricks

(2012) Y. Ke et al.   SCIENCE

Chemical Topology: Complex Molecular Knots, Links, and Entanglements

(2011) Ross S. Forgan et al.   CHEMICAL REVIEWS

Structural, mechanical, and thermodynamic properties of a coarse-grained DNA model

(2011) Thomas E. Ouldridge et al.   JOURNAL OF CHEMICAL PHYSICS

Challenges and opportunities for structural DNA nanotechnology

(2011) Andre V. Pinheiro et al.   Nature Nanotechnology

Protein stabilization in a highly knotted protein polymer

(2011) T. C. Sayre et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Nanomaterials Based on DNA

(2010) Nadrian C. Seeman   Annual Review of Biochemistry

Structure and folding of a designed knotted protein

(2010) N. P. King et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Stevedore's Protein Knot

(2010) Daniel Bölinger et al.   PLoS Computational Biology

Forward flux sampling for rare event simulations

(2009) Rosalind J Allen et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

A Replicable Tetrahedral Nanostructure Self-Assembled from a Single DNA Strand

(2009) Zhe Li et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Self-assembly of a nanoscale DNA box with a controllable lid

(2009) Ebbe S. Andersen et al.   NATURE

Rapid prototyping of 3D DNA-origami shapes with caDNAno

(2009) Shawn M. Douglas et al.   NUCLEIC ACIDS RESEARCH

The Crystal Structure of DehI Reveals a New α-Haloacid Dehalogenase Fold and Active-Site Mechanism

(2008) Jason W. Schmidberger et al.   JOURNAL OF MOLECULAR BIOLOGY

Stabilizing effect of knots on proteins

(2008) J. I. Sulkowska et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Predicting ultraviolet spectrum of single stranded and double stranded deoxyribonucleic acids

(2007) Andrey V. Tataurov et al.   BIOPHYSICAL CHEMISTRY