CSGene: a literature-based database for cell senescence genes and its application to identify critical cell aging pathways and associated diseases

Chromatin modifications: The driving force of senescence and aging?

(2016) Teresa DiMauro et al.   Aging-US

An evidence-based knowledgebase of metastasis suppressors to identify key pathways relevant to cancer metastasis

(2015) Min Zhao et al.   Scientific Reports

dbEMT: an epithelial-mesenchymal transition associated gene resource

(2015) Min Zhao et al.   Scientific Reports

Cellular senescence: from physiology to pathology

(2014) Daniel Muñoz-Espín et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The GOA database: Gene Ontology annotation updates for 2015

(2014) Rachael P. Huntley et al.   NUCLEIC ACIDS RESEARCH

Database resources of the National Center for Biotechnology Information

(2014)   NUCLEIC ACIDS RESEARCH

Ribosomal RNA gene repeats, their stability and cellular senescence

(2014) Takehiko KOBAYASHI   PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES

MicroRNAs linking inflamm-aging, cellular senescence and cancer

(2013) Fabiola Olivieri et al.   AGEING RESEARCH REVIEWS

Cutaneous squamous cell carcinoma: Estimated incidence of disease, nodal metastasis, and deaths from disease in the United States, 2012

(2013) Pritesh S. Karia et al.   JOURNAL OF THE AMERICAN ACADEMY OF DERMATOLOGY

The Reactome pathway knowledgebase

(2013) David Croft et al.   NUCLEIC ACIDS RESEARCH

The Evolutionary Dynamics of Protein-Protein Interaction Networks Inferred from the Reconstruction of Ancient Networks

(2013) Yuliang Jin et al.   PLoS One

EDdb: A web resource for eating disorder and its application to identify an extended adipocytokine signaling pathway related to eating disorder

(2013) Min Zhao et al.   Science China-Life Sciences

IQdb: an intelligence quotient score-associated gene resource for human intelligence

(2013) Lei Kong et al.   Database-The Journal of Biological Databases and Curation

Ubiquitous Amyloids

(2012) Wojciech Pulawski et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Senescence is an endogenous trigger for microRNA-directed transcriptional gene silencing in human cells

(2012) Moussa Benhamed et al.   NATURE CELL BIOLOGY

TSGene: a web resource for tumor suppressor genes

(2012) Min Zhao et al.   NUCLEIC ACIDS RESEARCH

Distinct and Competitive Regulatory Patterns of Tumor Suppressor Genes and Oncogenes in Ovarian Cancer

(2012) Min Zhao et al.   PLoS One

High similarity of phylogenetic profiles of rate-limiting enzymes with inhibitory relation in Human, Mouse, Rat, budding Yeast and E. coli

(2011) Min Zhao et al.   BMC GENOMICS

Regulation of ribosomal RNA gene copy number and its role in modulating genome integrity and evolutionary adaptability in yeast

(2011) Takehiko Kobayashi   CELLULAR AND MOLECULAR LIFE SCIENCES

Integrated genomic analyses of ovarian carcinoma

(2011) D. Bell et al.   NATURE

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

TSdb: A database of transporter substrates linking metabolic pathways and transporter systems on a genome scale via their shared substrates

(2011) Min Zhao et al.   Science China-Life Sciences

Cigarette smoke-induced autophagy is regulated by SIRT1–PARP-1-dependent mechanism: Implication in pathogenesis of COPD

(2010) Jae-woong Hwang et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

PathLocdb: a comprehensive database for the subcellular localization of metabolic pathways and its application to multiple localization analysis

(2010) Min Zhao et al.   BMC GENOMICS

Ensembl 2011

(2010) P. Flicek et al.   NUCLEIC ACIDS RESEARCH

Pathway Commons, a web resource for biological pathway data

(2010) E. G. Cerami et al.   NUCLEIC ACIDS RESEARCH

The BioGRID Interaction Database: 2011 update

(2010) C. Stark et al.   NUCLEIC ACIDS RESEARCH

Entrez Gene: gene-centered information at NCBI

(2010) D. Maglott et al.   NUCLEIC ACIDS RESEARCH

Database resources of the National Center for Biotechnology Information

(2010) E. W. Sayers et al.   NUCLEIC ACIDS RESEARCH

Reactome: a database of reactions, pathways and biological processes

(2010) D. Croft et al.   NUCLEIC ACIDS RESEARCH

From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations

(2009) P. Du et al.   BIOINFORMATICS

Human liver rate-limiting enzymes influence metabolic flux via branch points and inhibitors

(2009) Min Zhao et al.   BMC GENOMICS

Annotating the human genome with Disease Ontology

(2009) John D Osborne et al.   BMC GENOMICS

RLEdb: a database of rate-limiting enzymes and their regulation in human, rat, mouse, yeast and E. coli

(2009) Min Zhao et al.   CELL RESEARCH

Phenotypic and Genotypic Analyses of Genetic Skin Disease through the Online Mendelian Inheritance in Man (OMIM) Database

(2009) Jamison D. Feramisco et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

The Gene Ontology in 2010: extensions and refinements

(2009)   NUCLEIC ACIDS RESEARCH

KEGG for representation and analysis of molecular networks involving diseases and drugs

(2009) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

ToppGene Suite for gene list enrichment analysis and candidate gene prioritization

(2009) J. Chen et al.   NUCLEIC ACIDS RESEARCH

Potential etiologic and functional implications of genome-wide association loci for human diseases and traits

(2009) L. A. Hindorff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PID: the Pathway Interaction Database

(2008) Carl F. Schaefer et al.   NUCLEIC ACIDS RESEARCH

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

Human Protein Reference Database--2009 update

(2008) T. S. Keshava Prasad et al.   NUCLEIC ACIDS RESEARCH

Reactome knowledgebase of human biological pathways and processes

(2008) L. Matthews et al.   NUCLEIC ACIDS RESEARCH