miR2118-triggered phased siRNAs are differentially expressed during the panicle development of wild and domesticated African rice species

A dynamic evolutionary and functional landscape of plant phased small interfering RNAs

(2015) Yi Zheng et al.   BMC BIOLOGY

Spatiotemporally dynamic, cell-type–dependent premeiotic and meiotic phasiRNAs in maize anthers

(2015) Jixian Zhai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular Control of Grass Inflorescence Development

(2014) Dabing Zhang et al.   Annual Review of Plant Biology

Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice (Oryza glaberrima)

(2014) Benoit Nabholz et al.   MOLECULAR ECOLOGY

The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication

(2014) Muhua Wang et al.   NATURE GENETICS

Rice germline-specific Argonaute MEL1 protein binds to phasiRNAs generated from more than 700 lincRNAs

(2014) Reina Komiya et al.   PLANT JOURNAL

Rapid diversification of fiveOryzaAA genomes associated with rice adaptation

(2014) Qun-Jie Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An extensive analysis of the African rice genetic diversity through a global genotyping

(2014) Julie Orjuela et al.   THEORETICAL AND APPLIED GENETICS

Biogenesis and function of rice small RNAs from non-coding RNA precursors

(2013) Siwaret Arikit et al.   CURRENT OPINION IN PLANT BIOLOGY

Meristem maturation and inflorescence architecture—lessons from the Solanaceae

(2013) Soon Ju Park et al.   CURRENT OPINION IN PLANT BIOLOGY

Control of grass inflorescence form by the fine-tuning of meristem phase change

(2013) Junko Kyozuka et al.   CURRENT OPINION IN PLANT BIOLOGY

MicroRNA Superfamilies Descended from miR390 and Their Roles in Secondary Small Interfering RNA Biogenesis in Eudicots

(2013) Rui Xia et al.   PLANT CELL

Rice LHS1/OsMADS1 Controls Floret Meristem Specification by Coordinated Regulation of Transcription Factors and Hormone Signaling Pathways

(2013) I. Khanday et al.   PLANT PHYSIOLOGY

The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets

(2012) M. B. Stocks et al.   BIOINFORMATICS

A map of rice genome variation reveals the origin of cultivated rice

(2012) Xuehui Huang et al.   NATURE

Genomic dissection of small RNAs in wild rice (Oryza rufipogon): lessons for rice domestication

(2012) Yu Wang et al.   NEW PHYTOLOGIST

A MicroRNA Superfamily Regulates Nucleotide Binding Site-Leucine-Rich Repeats and Other mRNAs

(2012) P. V. Shivaprasad et al.   PLANT CELL

MicroRNA regulation of plant innate immune receptors

(2012) F. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs

(2011) J. Zhai et al.   GENES & DEVELOPMENT

Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)

(2011) Ting Peng et al.   JOURNAL OF EXPERIMENTAL BOTANY

Massive Analysis of Rice Small RNAs: Mechanistic Implications of Regulated MicroRNAs and Variants for Differential Target RNA Cleavage

(2011) D.-H. Jeong et al.   PLANT CELL

Roles of DCL4 and DCL3b in rice phased small RNA biogenesis

(2011) Xianwei Song et al.   PLANT JOURNAL

Domestication of Transposable Elements into MicroRNA Genes in Plants

(2011) Yang Li et al.   PLoS One

Rate of meristem maturation determines inflorescence architecture in tomato

(2011) S. J. Park et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic diversity and domestication history of African rice (Oryza glaberrima) as inferred from multiple gene sequences

(2011) Zhi-Ming Li et al.   THEORETICAL AND APPLIED GENETICS

Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa

(2011) Li Wei et al.   GENOME BIOLOGY

Sequence variation and selection of small RNAs in domesticated rice

(2010) Yu Wang et al.   BMC EVOLUTIONARY BIOLOGY

Divergent Expression Patterns of miR164 and CUP-SHAPED COTYLEDON Genes in Palms and Other Monocots: Implication for the Evolution of Meristem Function in Angiosperms

(2010) H. Adam et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome sequencing and analysis of the model grass Brachypodium distachyon

(2010) John P. Vogel et al.   NATURE

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

Small RNAs from MITE-derived stem-loop precursors regulate abscisic acid signaling and abiotic stress responses in rice

(2010) Yongsheng Yan et al.   PLANT JOURNAL

LEAFY blossoms

(2010) Edwige Moyroud et al.   TRENDS IN PLANT SCIENCE

Clusters and superclusters of phased small RNAs in the developing inflorescence of rice

(2009) C. Johnson et al.   GENOME RESEARCH

Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)

(2009) Rongfeng Cui et al.   PLANT JOURNAL

Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution

(2008) Sean B. Carroll   CELL

The evolving story of rice evolution

(2008) Duncan A. Vaughan et al.   PLANT SCIENCE

Evolution and development of virtual inflorescences

(2008) Ronald Koes   TRENDS IN PLANT SCIENCE