QTL mapping for downy mildew resistance in cucumber via bulked segregant analysis using next-generation sequencing and conventional methods

QTL mapping for downy mildew resistance in cucumber inbred line WI7120 (PI 330628)

(2016) Yuhui Wang et al.   THEORETICAL AND APPLIED GENETICS

Next Generation Sequencing Bulk Segregant Analysis of Potato Support that Differential Flux into the Cholesterol and Stigmasterol Metabolite Pools Is Important for Steroidal Glycoalkaloid Content

(2016) Kacper Piotr Kaminski et al.   POTATO RESEARCH

Molecular analysis of new sources of resistance to Pseudoperonospora cubensis (Berk. et Curt.) Rostovzev in cucumber

(2015) W. Szczechura et al.   RUSSIAN JOURNAL OF GENETICS

An SNP-based saturated genetic map and QTL analysis of fruit-related traits in cucumber using specific-length amplified fragment (SLAF) sequencing

(2015) Qingzhen Wei et al.   BMC GENOMICS

Combining Next Generation Sequencing with Bulked Segregant Analysis to Fine Map a Stem Moisture Locus in Sorghum (Sorghum bicolor L. Moench)

(2015) Yucui Han et al.   PLoS One

Ultrahigh-Density Linkage Map for Cultivated Cucumber (Cucumis sativus L.) Using a Single-Nucleotide Polymorphism Genotyping Array

(2015) Mor Rubinstein et al.   PLoS One

Heritability and Genetic Variance Estimates for Resistance to Downy Mildew in Cucumber Accession Ames 2354

(2014) Elzbieta U. Kozik et al.   CROP SCIENCE

Identification of quantitative trait loci for downy mildew resistance in cucumber (Cucumis sativus L.)

(2014) Yosuke Yoshioka et al.   EUPHYTICA

A high-resolution cucumber cytogenetic map integrated with the genome assembly

(2013) Jianying Sun et al.   BMC GENOMICS

QTL Mapping of Downy Mildew Resistance in an Introgression Line Derived from Interspecific Hybridization Between Cucumber andCucumis hystrix

(2013) Xin Pang et al.   JOURNAL OF PHYTOPATHOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations

(2013) Hiroki Takagi et al.   PLANT JOURNAL

Mapping of Quantitative Trait Loci Underlying Cold Tolerance in Rice Seedlings via High-Throughput Sequencing of Pooled Extremes

(2013) Zemao Yang et al.   PLoS One

QTL mapping of powdery mildew resistance in WI 2757 cucumber (Cucumis sativus L.)

(2013) Xiaoming He et al.   THEORETICAL AND APPLIED GENETICS

Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploid wheat

(2012) Martin Trick et al.   BMC PLANT BIOLOGY

Genome sequencing reveals agronomically important loci in rice using MutMap

(2012) Akira Abe et al.   NATURE BIOTECHNOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Chromosomal Mapping and QTL Analysis of Resistance to Downy Mildew inCucumis sativus

(2012) S. P. Zhang et al.   PLANT DISEASE

RNA-Seq improves annotation of protein-coding genes in the cucumber genome

(2011) Zhen Li et al.   BMC GENOMICS

The genetic basis of resistance to downy mildew in Cucumis spp.—latest developments and prospects

(2011) Helena Olczak-Woltman et al.   JOURNAL OF APPLIED GENETICS

Bulk Segregant Analysis Using Single Nucleotide Polymorphism Microarrays

(2011) Anthony Becker et al.   PLoS One

Construction of a high density integrated genetic map for cucumber (Cucumis sativus L.)

(2011) Wei-Wei Zhang et al.   THEORETICAL AND APPLIED GENETICS

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

The Statistics of Bulk Segregant Analysis Using Next Generation Sequencing

(2011) Paul M. Magwene et al.   PLoS Computational Biology

R/qtl: high-throughput multiple QTL mapping: Fig. 1.

(2010) Danny Arends et al.   BIOINFORMATICS

Dissection of genetically complex traits with extremely large pools of yeast segregants

(2010) Ian M. Ehrenreich et al.   NATURE

Bulk Segregant Analysis by High-Throughput Sequencing Reveals a Novel Xylose Utilization Gene from Saccharomyces cerevisiae

(2010) Jared W. Wenger et al.   PLoS Genetics

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

The genome of the cucumber, Cucumis sativus L.

(2009) Sanwen Huang et al.   NATURE GENETICS

SHOREmap: simultaneous mapping and mutation identification by deep sequencing

(2009) Korbinian Schneeberger et al.   NATURE METHODS

An Integrated Genetic and Cytogenetic Map of the Cucumber Genome

(2009) Yi Ren et al.   PLoS One