Epigenetic mechanisms and their role in plant development

Plant DNA methyltransferase genes: Multiplicity, expression, methylation patterns

(2016) V. V. Ashapkin et al.   BIOCHEMISTRY-MOSCOW

Meristic changes in flowering plants: How flowers play with numbers

(2016) Louis Ronse De Craene   FLORA

Dnmt2 is the most evolutionary conserved and enigmatic cytosine DNA methyltransferase in eukaryotes

(2016) V. V. Ashapkin et al.   RUSSIAN JOURNAL OF GENETICS

Loss of Karma transposon methylation underlies the mantled somaclonal variant of oil palm

(2015) Meilina Ong-Abdullah et al.   NATURE

The expanding world of small RNAs in plants

(2015) Filipe Borges et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Chromatin resetting mechanisms preventing transgenerational inheritance of epigenetic states

(2015) Mayumi Iwasaki   Frontiers in Plant Science

Meristem-specific expression of epigenetic regulators safeguards transposon silencing in Arabidopsis

(2014) T. Baubec et al.   EMBO REPORTS

Mechanism of DNA Methylation-Directed Histone Methylation by KRYPTONITE

(2014) Jiamu Du et al.   MOLECULAR CELL

Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state

(2014) Pedro Crevillén et al.   NATURE

Epigenetic reprogramming in plant sexual reproduction

(2014) Tomokazu Kawashima et al.   NATURE REVIEWS GENETICS

In vitro culture: an epigenetic challenge for plants

(2014) Rosa Us-Camas et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Epigenetic Regulation in Plants

(2014) C. S. Pikaard et al.   Cold Spring Harbor Perspectives in Biology

Methylome reorganization during in vitro dedifferentiation and regeneration of Populus trichocarpa

(2013) Kelly Vining et al.   BMC PLANT BIOLOGY

Artificial microRNAs reveal cell-specific differences in small RNA activity in pollen

(2013) Robert Grant-Downton et al.   CURRENT BIOLOGY

The ASYMMETRIC LEAVES complex maintains repression of KNOX homeobox genes via direct recruitment of Polycomb-repressive complex2

(2013) M. Lodha et al.   GENES & DEVELOPMENT

Variations on a theme: Polycomb group proteins in plants

(2013) Maria Derkacheva et al.   JOURNAL OF EXPERIMENTAL BOTANY

Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1

(2013) Julie A. Law et al.   NATURE

DNA methylation: roles in mammalian development

(2013) Zachary D. Smith et al.   NATURE REVIEWS GENETICS

Transcriptome Analysis of Developing Ovules in Rice Isolated by Laser Microdissection

(2013) Takahiko Kubo et al.   PLANT AND CELL PHYSIOLOGY

The Initiation of Epigenetic Silencing of Active Transposable Elements Is Triggered by RDR6 and 21-22 Nucleotide Small Interfering RNAs

(2013) S. Nuthikattu et al.   PLANT PHYSIOLOGY

New Insights into Somatic Embryogenesis: LEAFY COTYLEDON1, BABY BOOM1 and WUSCHEL-RELATED HOMEOBOX4 Are Epigenetically Regulated in Coffea canephora

(2013) Geovanny I. Nic-Can et al.   PLoS One

Dnmt2-dependent methylomes lack defined DNA methylation patterns

(2013) G. Raddatz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV

(2013) H. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNA-directed DNA methylation in plants

(2013) Heng Zhang et al.   RNA Biology

piRNAs Initiate an Epigenetic Memory of Nonself RNA in the C. elegans Germline

(2012) Masaki Shirayama et al.   CELL

Reprogramming of DNA Methylation in Pollen Guides Epigenetic Inheritance via Small RNA

(2012) Joseph P. Calarco et al.   CELL

DNA Methylation Dynamics during Sexual Reproduction in Arabidopsis thaliana

(2012) Pauline E. Jullien et al.   CURRENT BIOLOGY

Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome

(2012) A. T. Wierzbicki et al.   GENES & DEVELOPMENT

Paramutation in Drosophila linked to emergence of a piRNA-producing locus

(2012) Augustin de Vanssay et al.   NATURE

DDR complex facilitates global association of RNA polymerase V to promoters and evolutionarily young transposons

(2012) Xuehua Zhong et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Active DNA Demethylation in Plant Companion Cells Reinforces Transposon Methylation in Gametes

(2012) C. A. Ibarra et al.   SCIENCE

Reprogramming of H3K27me3 Is Critical for Acquisition of Pluripotency from Cultured Arabidopsis Tissues

(2012) Chongsheng He et al.   PLoS Genetics

Spontaneous epigenetic variation in the Arabidopsis thaliana methylome

(2011) Claude Becker et al.   NATURE

Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing

(2011) Jeremy R. Haag et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Production of Viable Gametes without Meiosis in Maize Deficient for an ARGONAUTE Protein

(2011) Manjit Singh et al.   PLANT CELL

AGAMOUS Terminates Floral Stem Cell Maintenance in Arabidopsis by Directly Repressing WUSCHEL through Recruitment of Polycomb Group Proteins

(2011) X. Liu et al.   PLANT CELL

Overexpression of AtBMI1C, a Polycomb Group Protein Gene, Accelerates Flowering in Arabidopsis

(2011) Wei Li et al.   PLoS One

Function of the DEMETER DNA glycosylase in the Arabidopsis thaliana male gametophyte

(2011) V. K. Schoft et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA Methylation and Histone Modifications Regulate De Novo Shoot Regeneration in Arabidopsis by Modulating WUSCHEL Expression and Auxin Signaling

(2011) Wei Li et al.   PLoS Genetics

Zygotic Resetting of the HISTONE 3 Variant Repertoire Participates in Epigenetic Reprogramming in Arabidopsis

(2010) Mathieu Ingouff et al.   CURRENT BIOLOGY

Paramutation in maize: RNA mediated trans-generational gene silencing

(2010) Mario Alberto Arteaga-Vazquez et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Repeat elements and the Arabidopsis DNA methylation landscape

(2010) F K Teixeira et al.   HEREDITY

Control of female gamete formation by a small RNA pathway in Arabidopsis

(2010) Vianey Olmedo-Monfil et al.   NATURE

Inactivation of a DNA Methylation Pathway in Maize Reproductive Organs Results in Apomixis-Like Phenotypes

(2010) Marcelina Garcia-Aguilar et al.   PLANT CELL

The transcriptome landscape of Arabidopsis male meiocytes from high-throughput sequencing: the complexity and evolution of the meiotic process

(2010) Hongxing Yang et al.   PLANT JOURNAL

Vernalization-Mediated Epigenetic Silencing by a Long Intronic Noncoding RNA

(2010) J. B. Heo et al.   SCIENCE

Epigenetic Reprogramming in Plant and Animal Development

(2010) Suhua Feng et al.   SCIENCE

Active DNA Demethylation Mediated by DNA Glycosylases

(2009) Jian-Kang Zhu   Annual Review of Genetics

Epigenetic Reprogramming and Small RNA Silencing of Transposable Elements in Pollen

(2009) R. Keith Slotkin et al.   CELL

Induction of RNA-directed DNA methylation upon decondensation of constitutive heterochromatin

(2009) Vera K Schoft et al.   EMBO REPORTS

An operational definition of epigenetics

(2009) S. L. Berger et al.   GENES & DEVELOPMENT

Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target

(2009) Szymon Swiezewski et al.   NATURE

Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis

(2009) Rebecca A. Mosher et al.   NATURE

ARABIDOPSIS TRITHORAX-RELATED7 Is Required for Methylation of Lysine 4 of Histone H3 and for Transcriptional Activation of FLOWERING LOCUS C

(2009) Y. Tamada et al.   PLANT CELL

Establishment of the Winter-Annual Growth Habit via FRIGIDA-Mediated Histone Methylation at FLOWERING LOCUS C in Arabidopsis

(2009) D. Jiang et al.   PLANT CELL

The Chromodomain of LIKE HETEROCHROMATIN PROTEIN 1 Is Essential for H3K27me3 Binding and Function during Arabidopsis Development

(2009) Vivien Exner et al.   PLoS One

MOLECULAR BIOLOGY: Dynamic DNA Methylation

(2009) J. A. Law et al.   SCIENCE

Cellular Programming of Plant Gene Imprinting

(2008) Jin Hoe Huh et al.   CELL

Polycomb Silencing of KNOX Genes Confines Shoot Stem Cell Niches in Arabidopsis

(2008) Lin Xu et al.   CURRENT BIOLOGY

Flowering and apical meristem growth dynamics

(2008) Dorota Kwiatkowska   JOURNAL OF EXPERIMENTAL BOTANY

ROS3 is an RNA-binding protein required for DNA demethylation in Arabidopsis

(2008) Xianwu Zheng et al.   NATURE

Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks

(2008) Daniel Zilberman et al.   NATURE

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

(2008) Shawn J. Cokus et al.   NATURE

ARABIDOPSIS TRITHORAX1 Dynamically Regulates FLOWERING LOCUS C Activation via Histone 3 Lysine 4 Trimethylation

(2008) S. Pien et al.   PLANT CELL

Repression of the floral transition via histone H2B monoubiquitination

(2008) Xiaofeng Gu et al.   PLANT JOURNAL

Resetting and regulation ofFLOWERING LOCUS Cexpression during Arabidopsis reproductive development

(2008) Jean Choi et al.   PLANT JOURNAL

Promoter DNA Hypermethylation and Gene Repression in Undifferentiated Arabidopsis Cells

(2008) María Berdasco et al.   PLoS One

A PHD-Polycomb Repressive Complex 2 triggers the epigenetic silencing of FLC during vernalization

(2008) F. De Lucia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Roles of RNA polymerase IV in gene silencing

(2008) Craig S. Pikaard et al.   TRENDS IN PLANT SCIENCE

Retinoblastoma and Its Binding Partner MSI1 Control Imprinting in Arabidopsis

(2008) Pauline E Jullien et al.   PLOS BIOLOGY