Methylome reorganization during in vitro dedifferentiation and regeneration of Populus trichocarpa

Plants regenerated from tissue culture contain stable epigenome changes in rice

(2013) Hume Stroud et al.   eLife

Dynamic DNA cytosine methylation in the Populus trichocarpa genome: tissue-level variation and relationship to gene expression

(2012) Kelly J Vining et al.   BMC GENOMICS

Global DNA Hypomethylation in Peripheral Blood Leukocytes as a Biomarker for Cancer Risk: A Meta-Analysis

(2012) Hae Dong Woo et al.   PLoS One

Epigenetic imbalance and the floral developmental abnormality of the in vitro-regenerated oil palm Elaeis guineensis

(2011) Estelle Jaligot et al.   ANNALS OF BOTANY

Regenerant Arabidopsis Lineages Display a Distinct Genome-Wide Spectrum of Mutations Conferring Variant Phenotypes

(2011) Caifu Jiang et al.   CURRENT BIOLOGY

An epigenetic view of plant cells cultured in vitro: somaclonal variation and beyond

(2011) C. Miguel et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comparative assessment of genetic and epigenetic variation among regenerants of potato (Solanum tuberosum) derived from long-term nodal tissue-culture and cell selection

(2011) Alison L. Dann et al.   PLANT CELL REPORTS

The catalytic domain of all eukaryotic cut-and-paste transposase superfamilies

(2011) Y.-W. Yuan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Modulation of embryo-forming capacity in culture through the expression of Brassica genes involved in the regulation of the shoot apical meristem

(2010) Mohamed Elhiti et al.   JOURNAL OF EXPERIMENTAL BOTANY

Progressive erosion of genetic and epigenetic variation in callus-derived cocoa (Theobroma cacao) plants

(2010) Carlos M. Rodríguez López et al.   NEW PHYTOLOGIST

Derepression of the Plant Chromovirus LORE1 Induces Germline Transposition in Regenerated Plants

(2010) Eigo Fukai et al.   PLoS Genetics

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Genome scale transcriptome analysis of shoot organogenesis in Populus

(2009) Yanghuan Bao et al.   BMC PLANT BIOLOGY

Tissue culture-induced transpositional activity of mPing is correlated with cytosine methylation in rice

(2009) Frédéric Ngezahayo et al.   BMC PLANT BIOLOGY

WUS and STM-based reporter genes for studying meristem development in poplar

(2009) Y. Bao et al.   PLANT CELL REPORTS

Epigenetic Regulation of Transposable Elements in Plants

(2008) Damon Lisch   Annual Review of Plant Biology

Isolation and expression analysis of genes encoding MET, CMT, and DRM methyltransferases in oil palm (Elaeis guineensis Jacq.) in relation to the ‘mantled’ somaclonal variation

(2008) Alain Rival et al.   JOURNAL OF EXPERIMENTAL BOTANY

Promoter DNA Hypermethylation and Gene Repression in Undifferentiated Arabidopsis Cells

(2008) María Berdasco et al.   PLoS One