Common errors in mass spectrometry-based analysis of post-translational modifications
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Common errors in mass spectrometry-based analysis of post-translational modifications
Authors
Keywords
-
Journal
PROTEOMICS
Volume 16, Issue 5, Pages 700-714
Publisher
Wiley
Online
2015-12-15
DOI
10.1002/pmic.201500355
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- GPQuest: A Spectral Library Matching Algorithm for Site-Specific Assignment of Tandem Mass Spectra to Intact N-glycopeptides
- (2015) Shadi Toghi Eshghi et al. ANALYTICAL CHEMISTRY
- Phosphotyrosine Signaling Analysis in Human Tumors Is Confounded by Systemic Ischemia-Driven Artifacts and Intra-Specimen Heterogeneity
- (2015) A. S. Gajadhar et al. CANCER RESEARCH
- Global profiling of protein lipidation using chemical proteomic technologies
- (2015) Edward W Tate et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- Optimization of LTQ-Orbitrap Mass Spectrometer Parameters for the Identification of ADP-Ribosylation Sites
- (2015) Florian Rosenthal et al. JOURNAL OF PROTEOME RESEARCH
- A mass-tolerant database search identifies a large proportion of unassigned spectra in shotgun proteomics as modified peptides
- (2015) Joel M Chick et al. NATURE BIOTECHNOLOGY
- Phosphoproteomic profiling of tumor tissues identifies HSP27 Ser82 phosphorylation as a robust marker of early ischemia
- (2015) Muhammad Saddiq Zahari et al. Scientific Reports
- Lysine Glutarylation Is a Protein Posttranslational Modification Regulated by SIRT5
- (2014) Minjia Tan et al. Cell Metabolism
- Phosphoproteomic Approach to Characterize Protein Mono- and Poly(ADP-ribosyl)ation Sites from Cells
- (2014) Casey M. Daniels et al. JOURNAL OF PROTEOME RESEARCH
- Analytical Utility of Mass Spectral Binning in Proteomic Experiments by SPectral Immonium Ion Detection (SPIID)
- (2014) Christian D. Kelstrup et al. MOLECULAR & CELLULAR PROTEOMICS
- Heterogeneity of Pancreatic Cancer Metastases in a Single Patient Revealed by Quantitative Proteomics
- (2014) Min-Sik Kim et al. MOLECULAR & CELLULAR PROTEOMICS
- Ischemia in Tumors Induces Early and Sustained Phosphorylation Changes in Stress Kinase Pathways but Does Not Affect Global Protein Levels
- (2014) Philipp Mertins et al. MOLECULAR & CELLULAR PROTEOMICS
- ProteomeXchange provides globally coordinated proteomics data submission and dissemination
- (2014) Juan A Vizcaíno et al. NATURE BIOTECHNOLOGY
- UniProt: a hub for protein information
- (2014) NUCLEIC ACIDS RESEARCH
- Precision Mapping of Coexisting Modifications in Histone H3 Tails from Embryonic Stem Cells by ETD-MS/MS
- (2013) Hye Ryung Jung et al. ANALYTICAL CHEMISTRY
- Proteogenomic Analysis of Human Chromosome 9-Encoded Genes from Human Samples and Lung Cancer Tissues
- (2013) Jung-Mo Ahn et al. JOURNAL OF PROTEOME RESEARCH
- Stabilising cysteinyl thiol oxidation and nitrosation for proteomic analysis
- (2013) Shibani Ratnayake et al. Journal of Proteomics
- Mapping and analysis of phosphorylation sites: a quick guide for cell biologists
- (2013) Noah Dephoure et al. MOLECULAR BIOLOGY OF THE CELL
- A large synthetic peptide and phosphopeptide reference library for mass spectrometry–based proteomics
- (2013) Harald Marx et al. NATURE BIOTECHNOLOGY
- Multiplexed MS/MS for improved data-independent acquisition
- (2013) Jarrett D Egertson et al. NATURE METHODS
- Drift time-specific collision energies enable deep-coverage data-independent acquisition proteomics
- (2013) Ute Distler et al. NATURE METHODS
- Mapping differential interactomes by affinity purification coupled with data-independent mass spectrometry acquisition
- (2013) Jean-Philippe Lambert et al. NATURE METHODS
- RefSeq: an update on mammalian reference sequences
- (2013) Kim D. Pruitt et al. NUCLEIC ACIDS RESEARCH
- Technologies and challenges in large-scale phosphoproteomics
- (2013) Kasper Engholm-Keller et al. PROTEOMICS
- Occurrence and Detection of Phosphopeptide Isomers in Large-Scale Phosphoproteomics Experiments
- (2012) Mathieu Courcelles et al. JOURNAL OF PROTEOME RESEARCH
- neXtProt: Organizing Protein Knowledge in the Context of Human Proteome Projects
- (2012) Pascale Gaudet et al. JOURNAL OF PROTEOME RESEARCH
- Chemical Deamidation: A Common Pitfall in Large-Scale N-Linked Glycoproteomic Mass Spectrometry-Based Analyses
- (2012) Giuseppe Palmisano et al. JOURNAL OF PROTEOME RESEARCH
- Proteomic analysis of an unsequenced plant — Mangifera indica
- (2012) Santosh Renuse et al. Journal of Proteomics
- TSLP Signaling Network Revealed by SILAC-Based Phosphoproteomics
- (2012) Jun Zhong et al. MOLECULAR & CELLULAR PROTEOMICS
- Lysine Succinylation and Lysine Malonylation in Histones
- (2012) Zhongyu Xie et al. MOLECULAR & CELLULAR PROTEOMICS
- Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis
- (2012) Ludovic C. Gillet et al. MOLECULAR & CELLULAR PROTEOMICS
- Electron transfer dissociation mass spectrometry in proteomics
- (2012) Min-Sik Kim et al. PROTEOMICS
- A proteogenomic approach to map the proteome of an unsequenced pathogen - Leishmania donovani
- (2012) Harsh Pawar et al. PROTEOMICS
- Sample preparation and analytical strategies for large-scale phosphoproteomics experiments
- (2012) Evgeny Kanshin et al. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- Increasing phosphoproteomic coverage through sequential digestion by complementary proteases
- (2011) Jason M. Gilmore et al. ANALYTICAL AND BIOANALYTICAL CHEMISTRY
- Protein palmitoylation and subcellular trafficking
- (2011) Clara Aicart-Ramos et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- Combining High-Energy C-Trap Dissociation and Electron Transfer Dissociation for Protein O-GlcNAc Modification Site Assignment
- (2011) Peng Zhao et al. JOURNAL OF PROTEOME RESEARCH
- Universal and Confident Phosphorylation Site Localization Using phosphoRS
- (2011) Thomas Taus et al. JOURNAL OF PROTEOME RESEARCH
- Improved Peptide Identification by Targeted Fragmentation Using CID, HCD and ETD on an LTQ-Orbitrap Velos
- (2011) Christian K. Frese et al. JOURNAL OF PROTEOME RESEARCH
- Fast Multi-blind Modification Search through Tandem Mass Spectrometry
- (2011) Seungjin Na et al. MOLECULAR & CELLULAR PROTEOMICS
- Correct Interpretation of Comprehensive Phosphorylation Dynamics Requires Normalization by Protein Expression Changes
- (2011) Ronghu Wu et al. MOLECULAR & CELLULAR PROTEOMICS
- PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse
- (2011) P. V. Hornbeck et al. NUCLEIC ACIDS RESEARCH
- Systematic evaluation of alternating CID and ETD fragmentation for phosphorylated peptides
- (2011) Min-Sik Kim et al. PROTEOMICS
- Proteome-wide post-translational modification statistics: frequency analysis and curation of the swiss-prot database
- (2011) George A. Khoury et al. Scientific Reports
- 100% protein sequence coverage: a modern form of surrealism in proteomics
- (2010) Bjoern Meyer et al. AMINO ACIDS
- Glycomics Hits the Big Time
- (2010) Gerald W. Hart et al. CELL
- Assessment of resolution parameters for CID-based shotgun proteomic experiments on the LTQ-Orbitrap mass spectrometer
- (2010) Min-Sik Kim et al. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- A Novel Proteomics Approach to Identify SUMOylated Proteins and Their Modification Sites in Human Cells
- (2010) Frederic Galisson et al. MOLECULAR & CELLULAR PROTEOMICS
- Confident Phosphorylation Site Localization Using the Mascot Delta Score
- (2010) Mikhail M. Savitski et al. MOLECULAR & CELLULAR PROTEOMICS
- Phosphoproteomics in cancer
- (2010) H.C. Harsha et al. Molecular Oncology
- Identification of lysine succinylation as a new post-translational modification
- (2010) Zhihong Zhang et al. Nature Chemical Biology
- Decoding signalling networks by mass spectrometry-based proteomics
- (2010) Chunaram Choudhary et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Computational analysis of unassigned high-quality MS/MS spectra in proteomic data sets
- (2010) Kang Ning et al. PROTEOMICS
- O-GlcNAc signaling: a metabolic link between diabetes and cancer?
- (2010) C. Slawson et al. TRENDS IN BIOCHEMICAL SCIENCES
- Protein Inference by Assembling Peptides Identified from Tandem Mass Spectra
- (2009) Jinhong Shi et al. Current Bioinformatics
- Phosphopeptide fragmentation and analysis by mass spectrometry
- (2009) Paul J. Boersema et al. JOURNAL OF MASS SPECTROMETRY
- MSQuant, an Open Source Platform for Mass Spectrometry-Based Quantitative Proteomics
- (2009) Peter Mortensen et al. JOURNAL OF PROTEOME RESEARCH
- Universal sample preparation method for proteome analysis
- (2009) Jacek R Wiśniewski et al. NATURE METHODS
- Utility of Immonium Ions for Assignment of ε-N-Acetyllysine-Containing Peptides by Tandem Mass Spectrometry
- (2008) Morten B. Trelle et al. ANALYTICAL CHEMISTRY
- PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows
- (2008) Eric W Deutsch et al. EMBO REPORTS
- Identification and Validation of Eukaryotic Aspartate and Glutamate Methylation in Proteins
- (2008) Robert Sprung et al. JOURNAL OF PROTEOME RESEARCH
- Phase Transfer Surfactant-Aided Trypsin Digestion for Membrane Proteome Analysis
- (2008) Takeshi Masuda et al. JOURNAL OF PROTEOME RESEARCH
- Artifactual Sulfation of Silver-stained Proteins
- (2008) Marlene Gharib et al. MOLECULAR & CELLULAR PROTEOMICS
- The PSI-MOD community standard for representation of protein modification data
- (2008) Luisa Montecchi-Palazzi et al. NATURE BIOTECHNOLOGY
- Decision tree–driven tandem mass spectrometry for shotgun proteomics
- (2008) Danielle L Swaney et al. NATURE METHODS
- Iodoacetamide-induced artifact mimics ubiquitination in mass spectrometry
- (2008) Michael L Nielsen et al. NATURE METHODS
- Human Protein Reference Database--2009 update
- (2008) T. S. Keshava Prasad et al. NUCLEIC ACIDS RESEARCH
- Triplex protein quantification based on stable isotope labeling by peptide dimethylation applied to cell and tissue lysates
- (2008) Paul J. Boersema et al. PROTEOMICS
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now