Electron transfer dissociation mass spectrometry in proteomics

Native Electrospray and Electron-Capture Dissociation FTICR Mass Spectrometry for Top-Down Studies of Protein Assemblies

(2011) Hao Zhang et al.   ANALYTICAL CHEMISTRY

On the Scalability and Requirements of Whole Protein Mass Spectrometry

(2011) Philip D. Compton et al.   ANALYTICAL CHEMISTRY

A proteogenomic analysis of Anopheles gambiae using high-resolution Fourier transform mass spectrometry

(2011) R. Chaerkady et al.   GENOME RESEARCH

Combining High-Energy C-Trap Dissociation and Electron Transfer Dissociation for Protein O-GlcNAc Modification Site Assignment

(2011) Peng Zhao et al.   JOURNAL OF PROTEOME RESEARCH

More than 100,000 Detectable Peptide Species Elute in Single Shotgun Proteomics Runs but the Majority is Inaccessible to Data-Dependent LC−MS/MS

(2011) Annette Michalski et al.   JOURNAL OF PROTEOME RESEARCH

Effectiveness of CID, HCD, and ETD with FT MS/MS for Degradomic-Peptidomic Analysis: Comparison of Peptide Identification Methods

(2011) Yufeng Shen et al.   JOURNAL OF PROTEOME RESEARCH

Characterization and Diagnostic Value of Amino Acid Side Chain Neutral Losses Following Electron-Transfer Dissociation

(2011) Qiangwei Xia et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

A Proteome-wide, Quantitative Survey of In Vivo Ubiquitylation Sites Reveals Widespread Regulatory Roles

(2011) Sebastian A. Wagner et al.   MOLECULAR & CELLULAR PROTEOMICS

Systematic and Quantitative Assessment of the Ubiquitin-Modified Proteome

(2011) Woong Kim et al.   MOLECULAR CELL

Systematic evaluation of alternating CID and ETD fragmentation for phosphorylated peptides

(2011) Min-Sik Kim et al.   PROTEOMICS

Activated-Ion Electron Transfer Dissociation Improves the Ability of Electron Transfer Dissociation to Identify Peptides in a Complex Mixture

(2010) Aaron R. Ledvina et al.   ANALYTICAL CHEMISTRY

Gas-Phase Chemistry of Multiply Charged Bioions in Analytical Mass Spectrometry

(2010) Teng-Yi Huang et al.   Annual Review of Analytical Chemistry

Cleavage specificities of the brother and sister proteases Lys-C and Lys-N

(2010) Reinout Raijmakers et al.   CHEMICAL COMMUNICATIONS

Top-down mass spectrometry of supercharged native protein–ligand complexes

(2010) Sheng Yin et al.   INTERNATIONAL JOURNAL OF MASS SPECTROMETRY

Improved Peptide Identification for Proteomic Analysis Based on Comprehensive Characterization of Electron Transfer Dissociation Spectra

(2010) Rui-Xiang Sun et al.   JOURNAL OF PROTEOME RESEARCH

Purification and Identification ofO-GlcNAc-Modified Peptides Using Phosphate-Based Alkyne CLICK Chemistry in Combination with Titanium Dioxide Chromatography and Mass Spectrometry

(2010) Benjamin L. Parker et al.   JOURNAL OF PROTEOME RESEARCH

Proteogenomics to discover the full coding content of genomes: A computational perspective

(2010) Natalie Castellana et al.   Journal of Proteomics

Electron transfer dissociation with supplemental activation to differentiate aspartic and isoaspartic residues in doubly charged peptide cations

(2010) Wai Yi Kelly Chan et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Improving Software Performance for Peptide Electron Transfer Dissociation Data Analysis by Implementation of Charge State- and Sequence-Dependent Scoring

(2010) Peter R. Baker et al.   MOLECULAR & CELLULAR PROTEOMICS

Quantitative Mass Spectrometry of Histones H3.2 and H3.3 inSuz12-deficient Mouse Embryonic Stem Cells Reveals Distinct, Dynamic Post-translational Modifications at Lys-27 and Lys-36

(2010) Hye Ryung Jung et al.   MOLECULAR & CELLULAR PROTEOMICS

The Generating Function of CID, ETD, and CID/ETD Pairs of Tandem Mass Spectra: Applications to Database Search

(2010) Sangtae Kim et al.   MOLECULAR & CELLULAR PROTEOMICS

Mass spectrometry at the interface of proteomics and genomics

(2010) Karsten Krug et al.   Molecular BioSystems

Phosphoproteomics in cancer

(2010) H.C. Harsha et al.   Molecular Oncology

Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling

(2010) Guoqiang Xu et al.   NATURE BIOTECHNOLOGY

PARP1 ADP-ribosylates lysine residues of the core histone tails

(2010) Simon Messner et al.   NUCLEIC ACIDS RESEARCH

Proteogenomics

(2010) Santosh Renuse et al.   PROTEOMICS

Extensive Crosstalk Between O-GlcNAcylation and Phosphorylation Regulates Cytokinesis

(2010) Z. Wang et al.   Science Signaling

Evaluation of Several MS/MS Search Algorithms for Analysis of Spectra Derived from Electron Transfer Dissociation Experiments

(2009) Kumaran Kandasamy et al.   ANALYTICAL CHEMISTRY

Electron Transfer Dissociation Facilitates Sequencing of Adenosine Diphosphate-Ribosylated Peptides

(2009) Barry M. Zee et al.   ANALYTICAL CHEMISTRY

Infrared Photoactivation Reduces Peptide Folding and Hydrogen-Atom Migration following ETD Tandem Mass Spectrometry

(2009) Aaron R. Ledvina et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Phosphopeptide fragmentation and analysis by mass spectrometry

(2009) Paul J. Boersema et al.   JOURNAL OF MASS SPECTROMETRY

Toward Proteome-Scale Identification and Quantification of Isoaspartyl Residues in Biological Samples

(2009) Hongqian Yang et al.   JOURNAL OF PROTEOME RESEARCH

Electron Transfer Dissociation in Conjunction with Collision Activation To Investigate theDrosophila melanogasterPhosphoproteome

(2009) Bruno Domon et al.   JOURNAL OF PROTEOME RESEARCH

A New Probabilistic Database Search Algorithm for ETD Spectra

(2009) Rovshan G. Sadygov et al.   JOURNAL OF PROTEOME RESEARCH

Proteome Analysis ofSorangium cellulosumEmploying 2D-HPLC-MS/MS and Improved Database Searching Strategies for CID and ETD Fragment Spectra

(2009) Andreas Leinenbach et al.   JOURNAL OF PROTEOME RESEARCH

Post-acquisition ETD spectral processing for increased peptide identifications

(2009) David M. Good et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Comparison of CID versus ETD based MS/MS fragmentation for the analysis of protein ubiquitination

(2009) Frank Sobott et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

High Throughput Characterization of Combinatorial Histone Codes

(2009) Nicolas L. Young et al.   MOLECULAR & CELLULAR PROTEOMICS

Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry

(2009) D. L. Swaney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of protein O-GlcNAcylation sites using electron transfer dissociation mass spectrometry on native peptides

(2009) R. J. Chalkley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The effect of interfering ions on search algorithm performance for electron-transfer dissociation data

(2009) David M. Good et al.   PROTEOMICS

Comprehensive Comparison of Collision Induced Dissociation and Electron Transfer Dissociation

(2008) Henrik Molina et al.   ANALYTICAL CHEMISTRY

Improved Methods for the Enrichment and Analysis of Glycated Peptides

(2008) Qibin Zhang et al.   ANALYTICAL CHEMISTRY

Automated Proteomics ofE. colivia Top-Down Electron-Transfer Dissociation Mass Spectrometry

(2008) Maureen K. Bunger et al.   ANALYTICAL CHEMISTRY

A Proteomics Grade Electron Transfer Dissociation-Enabled Hybrid Linear Ion Trap-Orbitrap Mass Spectrometer

(2008) Graeme C. McAlister et al.   JOURNAL OF PROTEOME RESEARCH

Proteomic Profiling of Nonenzymatically Glycated Proteins in Human Plasma and Erythrocyte Membranes

(2008) Qibin Zhang et al.   JOURNAL OF PROTEOME RESEARCH

Spectral Probabilities and Generating Functions of Tandem Mass Spectra: A Strike against Decoy Databases

(2008) Sangtae Kim et al.   JOURNAL OF PROTEOME RESEARCH

Accurate localization and relative quantification of arginine methylation using nanoflow liquid chromatography coupled to electron transfer dissociation and drbitrap mass spectrometry

(2008) Hao Wang et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Straightforward ladder sequencing of peptides using a Lys-N metalloendopeptidase

(2008) Nadia Taouatas et al.   NATURE METHODS

Decision tree–driven tandem mass spectrometry for shotgun proteomics

(2008) Danielle L Swaney et al.   NATURE METHODS

Iodoacetamide-induced artifact mimics ubiquitination in mass spectrometry

(2008) Michael L Nielsen et al.   NATURE METHODS

Application of electron transfer dissociation (ETD) for the analysis of posttranslational modifications

(2008) Julia Wiesner et al.   PROTEOMICS

Evolution of instrumentation for the study of gas-phase ion/ion chemistry via mass spectrometry

(2007) Yu Xia et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY