Small Open Reading Frames, Non-Coding RNAs and Repetitive Elements in Bradyrhizobium japonicum USDA 110

Genome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis – a rich resource to identify new transcripts, proteins and to study gene regulation

(2016) Jelena Čuklina et al.   BMC GENOMICS

A Role for REP Sequences in Regulating Translation

(2015) Wenxing Liang et al.   MOLECULAR CELL

Stable Fluorescent and Enzymatic Tagging ofBradyrhizobium diazoefficiensto Analyze Host-Plant Infection and Colonization

(2015) Raphael Ledermann et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The Phyre2 web portal for protein modeling, prediction and analysis

(2015) Lawrence A Kelley et al.   Nature Protocols

Rhizobia and their bio-partners as novel drivers for functional remediation in contaminated soils

(2015) Ying Teng et al.   Frontiers in Plant Science

Small Proteins Can No Longer Be Ignored

(2014) Gisela Storz et al.   Annual Review of Biochemistry

The small protein floodgates are opening; now the functional analysis begins

(2014) Kumaran S Ramamurthi et al.   BMC BIOLOGY

Differential RNA-seq: the approach behind and the biological insight gained

(2014) Cynthia M Sharma et al.   CURRENT OPINION IN MICROBIOLOGY

A Bacterial Iron Exporter for Maintenance of Iron Homeostasis

(2014) Siva Sankari et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Proteogenomics: concepts, applications and computational strategies

(2014) Alexey I Nesvizhskii   NATURE METHODS

TargetRNA2: identifying targets of small regulatory RNAs in bacteria

(2014) Mary Beth Kery et al.   NUCLEIC ACIDS RESEARCH

Rfam 12.0: updates to the RNA families database

(2014) Eric P. Nawrocki et al.   NUCLEIC ACIDS RESEARCH

Riboregulation in plant-associated α-proteobacteria

(2014) Anke Becker et al.   RNA Biology

Polyphasic evidence supporting the reclassification of Bradyrhizobium japonicum group Ia strains as Bradyrhizobium diazoefficiens sp. nov.

(2013) J. R. M. Delamuta et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Toxin-Antitoxin Systems on the Large Defense Plasmid pSYSA ofSynechocystissp. PCC 6803

(2013) Stefan Kopfmann et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Bacterial Persistence and Toxin-Antitoxin Loci

(2012) Kenn Gerdes et al.   Annual Review of Microbiology

An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs

(2012) Yanjie Chao et al.   EMBO JOURNAL

The excludon: a new concept in bacterial antisense RNA-mediated gene regulation

(2012) Nina Sesto et al.   NATURE REVIEWS MICROBIOLOGY

RNase E: at the interface of bacterial RNA processing and decay

(2012) George A. Mackie   NATURE REVIEWS MICROBIOLOGY

RNA snap ™: a rapid, quantitative and inexpensive, method for isolating total RNA from bacteria

(2012) Mark B. Stead et al.   NUCLEIC ACIDS RESEARCH

Regulation of bacterial photosynthesis genes by the small noncoding RNA PcrZ

(2012) N. N. Mank et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Small RNAs of theBradyrhizobium/Rhodopseudomonaslineage and their analysis

(2012) Ramakanth Madhugiri et al.   RNA Biology

Root Nodulation: A Paradigm for How Plant-Microbe Symbiosis Influences Host Developmental Pathways

(2011) Guilhem J. Desbrosses et al.   Cell Host & Microbe

cis-Antisense RNA, Another Level of Gene Regulation in Bacteria

(2011) J. Georg et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD

(2011) Kathrin S. Fröhlich et al.   NUCLEIC ACIDS RESEARCH

Missing genes in the annotation of prokaryotic genomes

(2010) Andrew S Warren et al.   BMC BIOINFORMATICS

Freiburg RNA Tools: a web server integrating INTARNA, EXPARNA and LOCARNA

(2010) C. Smith et al.   NUCLEIC ACIDS RESEARCH

Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism

(2010) Chantal Bohn et al.   NUCLEIC ACIDS RESEARCH

An integrated proteomics and transcriptomics reference data set provides new insights into the Bradyrhizobium japonicum bacteroid metabolism in soybean root nodules

(2010) Nathanaël Delmotte et al.   PROTEOMICS

RNase J is involved in the 5′-end maturation of 16S rRNA and 23S rRNA inSinorhizobium meliloti

(2009) Ramakanth Madhugiri et al.   FEBS LETTERS

Comprehensive Assessment of the Regulons Controlled by the FixLJ-FixK2-FixK1 Cascade in Bradyrhizobium japonicum

(2008) S. Mesa et al.   JOURNAL OF BACTERIOLOGY

Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence

(2008) Gilly Padalon-Brauch et al.   NUCLEIC ACIDS RESEARCH