Uncovering leaf rust responsive miRNAs in wheat (Triticum aestivum L.) using high-throughput sequencing and prediction of their targets through degradome analysis

Erratum to: Association mapping of North American spring wheat breeding germplasm reveals loci conferring resistance to Ug99 and other African stem rust races

(2016) P. Bajgain et al.   BMC PLANT BIOLOGY

Wheat miRNA ancestors: evident by transcriptome analysis of A, B, and D genome donors

(2016) Burcu Alptekin et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Noncoding RNAs of Plant Viruses and Viroids: Sponges of Host Translation and RNA Interference Machinery

(2016) W. Allen Miller et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Small RNAs Add Zing to the Zig-Zag-Zig Model of Plant Defenses

(2016) Qili Fei et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

De Novo Assembled Wheat Transcriptomes Delineate Differentially Expressed Host Genes in Response to Leaf Rust Infection

(2016) Saket Chandra et al.   PLoS One

Genome-Wide Investigation of MicroRNAs and Their Targets in Response to Freezing Stress in Medicago sativa L., Based on High-Throughput Sequencing

(2016) Yongjun Shu et al.   G3-Genes Genomes Genetics

Dissecting miRNAs in Wheat D Genome Progenitor, Aegilops tauschii

(2016) Bala A. Akpinar et al.   Frontiers in Plant Science

Novel and conserved miRNAs in the halophyte Suaeda maritima identified by deep sequencing and computational predictions using the ESTs of two mangrove plants

(2015) Sachin Ashruba Gharat et al.   BMC PLANT BIOLOGY

miRNA-based drought regulation in wheat

(2015) Guray Akdogan et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Root precursors of microRNAs in wild emmer and modern wheats show major differences in response to drought stress

(2015) Bala Ani Akpinar et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Plant miRNAs: biogenesis, organization and origins

(2015) Hikmet Budak et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Dynamic and Coordinated Expression Changes of Rice Small RNAs in Response to Xanthomonas oryzae pv. oryzae

(2015) Ying-Tao Zhao et al.   Journal of Genetics and Genomics

Stress responsive miRNAs and isomiRs in cereals

(2015) Hikmet Budak et al.   PLANT SCIENCE

Small RNA and degradome sequencing reveals microRNAs and their targets involved in tomato pedicel abscission

(2015) Tao Xu et al.   PLANTA

Small RNAs: A New Paradigm in Plant-Microbe Interactions

(2014) Arne Weiberg et al.   Annual Review of Phytopathology

Identification of miRNAs and their target genes in developing maize ears by combined small RNA and degradome sequencing

(2014) Hongjun Liu et al.   BMC GENOMICS

Whole-genome discovery of miRNAs and their targets in wheat (Triticum aestivum L.)

(2014) Fenglong Sun et al.   BMC PLANT BIOLOGY

History and current status of wheat miRNAs using next-generation sequencing and their roles in development and stress

(2014) H. Budak et al.   Briefings in Functional Genomics

New wheat microRNA using whole-genome sequence

(2014) Kuaybe Yucebilgili Kurtoglu et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Functional characterisation of a WRKY transcription factor of wheat and its expression analysis during leaf rust pathogenesis

(2014) Dhananjay Kumar et al.   FUNCTIONAL PLANT BIOLOGY

Identification and functional analysis of novel and conserved microRNAs in tomato

(2014) Yushi Luan et al.   MOLECULAR BIOLOGY REPORTS

Profiling and characterization of eggplant (Solanum melongena L.) microRNAs and their targets

(2014) Muhammad Din et al.   MOLECULAR BIOLOGY REPORTS

A Comprehensive Genome-Wide Study on Tissue-Specific and Abiotic Stress-Specific miRNAs in Triticum aestivum

(2014) Ritu Pandey et al.   PLoS One

Development-associated microRNAs in grains of wheat (Triticum aestivum L.)

(2013) Fanrong Meng et al.   BMC PLANT BIOLOGY

Next-Generation Survey Sequencing and the Molecular Organization of Wheat Chromosome 6B

(2013) T. Tanaka et al.   DNA RESEARCH

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Multiple Rice MicroRNAs Are Involved in Immunity against the Blast Fungus Magnaporthe oryzae

(2013) Y. Li et al.   PLANT PHYSIOLOGY

Unique and Conserved MicroRNAs in Wheat Chromosome 5D Revealed by Next-Generation Sequencing

(2013) Kuaybe Yucebilgili Kurtoglu et al.   PLoS One

Fungal Small RNAs Suppress Plant Immunity by Hijacking Host RNA Interference Pathways

(2013) Arne Weiberg et al.   SCIENCE

The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets

(2012) M. B. Stocks et al.   BIOINFORMATICS

Subgenomic analysis of microRNAs in polyploid wheat

(2012) Melda Kantar et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Computational Identification of MicroRNAs in Strawberry Expressed Sequence Tags and Validation of Their Precise Sequences by miR-RACE

(2012) Qing-Hua Dong et al.   JOURNAL OF HEREDITY

Targeted spatio-temporal expression based characterization of state of infection and time-point of maximum defense in wheat NILs during leaf rust infection

(2012) Dharmendra Singh et al.   MOLECULAR BIOLOGY REPORTS

Alteration of tomato microRNAs expression during fruit development upon Cucumber mosaic virus and Tomato aspermy virus infection

(2012) Junli Feng et al.   MOLECULAR BIOLOGY REPORTS

The Top 10 fungal pathogens in molecular plant pathology

(2012) RALPH DEAN et al.   MOLECULAR PLANT PATHOLOGY

Analysis of the bread wheat genome using whole-genome shotgun sequencing

(2012) Rachel Brenchley et al.   NATURE

PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing

(2012) Leighton Folkes et al.   NUCLEIC ACIDS RESEARCH

Uncovering Small RNA-Mediated Responses to Cold Stress in a Wheat Thermosensitive Genic Male-Sterile Line by Deep Sequencing

(2012) Z. Tang et al.   PLANT PHYSIOLOGY

Sorting the Wheat from the Chaff: Identifying miRNAs in Genomic Survey Sequences of Triticum aestivum Chromosome 1AL

(2012) Stuart J. Lucas et al.   PLoS One

Functions of microRNAs in plant stress responses

(2012) Ramanjulu Sunkar et al.   TRENDS IN PLANT SCIENCE

Borlaug Global Rust Initiative provides momentum for wheat rust research

(2011) R. A. McIntosh et al.   EUPHYTICA

Wheat Hybridization and Polyploidization Results in Deregulation of Small RNAs

(2011) Michal Kenan-Eichler et al.   GENETICS

The International Nucleotide Sequence Database Collaboration

(2011) I. Karsch-Mizrachi et al.   NUCLEIC ACIDS RESEARCH

Role of Small RNAs in Host-Microbe Interactions

(2010) Surekha Katiyar-Agarwal et al.   Annual Review of Phytopathology

Diverse set of microRNAs are responsive to powdery mildew infection and heat stress in wheat (Triticum aestivum L.)

(2010) Mingming Xin et al.   BMC PLANT BIOLOGY

Transcriptome-wide identification of microRNA targets in rice

(2010) Yong-Fang Li et al.   PLANT JOURNAL

Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome

(2009) Marcelo A German et al.   Nature Protocols

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets

(2008) C. Addo-Quaye et al.   BIOINFORMATICS

A toolkit for analysing large-scale plant small RNA datasets

(2008) S. Moxon et al.   BIOINFORMATICS

PatMaN: rapid alignment of short sequences to large databases

(2008) Kay Prüfer et al.   BIOINFORMATICS

Identification of novel and candidate miRNAs in rice by high throughput sequencing

(2008) Ramanjulu Sunkar et al.   BMC PLANT BIOLOGY

Endogenous siRNA and miRNA Targets Identified by Sequencing of the Arabidopsis Degradome

(2008) Charles Addo-Quaye et al.   CURRENT BIOLOGY

Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa

(2008) R. D. Morin et al.   GENOME RESEARCH

Global identification of microRNA–target RNA pairs by parallel analysis of RNA ends

(2008) Marcelo A German et al.   NATURE BIOTECHNOLOGY

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL