Small RNA and degradome sequencing reveals microRNAs and their targets involved in tomato pedicel abscission

Paleo-evolutionary plasticity of plant disease resistance genes

(2014) Rongzhi Zhang et al.   BMC GENOMICS

microRNA156-targeted SPL/SBP box transcription factors regulate tomato ovary and fruit development

(2014) Geraldo Felipe Ferreira e Silva et al.   PLANT JOURNAL

Involvement of ethylene-responsive microRNAs and their targets in increased latex yield in the rubber tree in response to ethylene treatment

(2014) Porawee Pramoolkit et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Overexpression of SlREV alters the development of the flower pedicel abscission zone and fruit formation in tomato

(2014) Guojian Hu et al.   PLANT SCIENCE

Identification of microRNAs and their targets in tomato infected with Cucumber mosaic virus based on deep sequencing

(2014) Junli Feng et al.   PLANTA

Transcriptomics of the Interaction between the Monopartite Phloem-Limited Geminivirus Tomato Yellow Leaf Curl Sardinia Virus and Solanum lycopersicum Highlights a Role for Plant Hormones, Autophagy and Plant Immune System Fine Tuning during Infection

(2014) Laura Miozzi et al.   PLoS One

Transcriptional profiling of the Arabidopsis abscission mutant hae hsl2 by RNA-Seq

(2013) Chad E Niederhuth et al.   BMC GENOMICS

Expression profiling of tomato pre-abscission pedicels provides insights into abscission zone properties including competence to respond to abscission signals

(2013) Toshitsugu Nakano et al.   BMC PLANT BIOLOGY

Global and local perturbation of the tomato microRNA pathway by atrans-activatedDICER-LIKE 1mutant

(2013) Michael Kravchik et al.   JOURNAL OF EXPERIMENTAL BOTANY

Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis

(2013) Rumyana Karlova et al.   JOURNAL OF EXPERIMENTAL BOTANY

Temporal and Spatial Distribution of Auxin Response Factor Genes During Tomato Flower Abscission

(2013) Xiaoxi Guan et al.   JOURNAL OF PLANT GROWTH REGULATION

Transcriptome Analysis of Mature Fruit Abscission Control in Olive

(2013) Jose A. Gil-Amado et al.   PLANT AND CELL PHYSIOLOGY

Global identification of miRNAs and targets in Populus euphratica under salt stress

(2013) Bosheng Li et al.   PLANT MOLECULAR BIOLOGY

microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula

(2013) Rodney P. Eyles et al.   PLANTA

Transcriptomic Events Involved in Melon Mature-Fruit Abscission Comprise the Sequential Induction of Cell-Wall Degrading Genes Coupled to a Stimulation of Endo and Exocytosis

(2013) Jorge Corbacho et al.   PLoS One

A Jasmonate ZIM-Domain Protein NaJAZd Regulates Floral Jasmonic Acid Levels and Counteracts Flower Abscission in Nicotiana attenuata Plants

(2013) Youngjoo Oh et al.   PLoS One

Integrative Analysis of miRNA and mRNA Profiles in Response to Ethylene in Rose Petals during Flower Opening

(2013) Haixia Pei et al.   PLoS One

Identification of novel MiRNAs and MiRNA expression profiling during grain development in indica rice

(2012) Ying Lan et al.   BMC GENOMICS

High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot

(2012) Zhihong Gao et al.   BMC GENOMICS

Sculpting the maturation, softening and ethylene pathway: The influences of microRNAs on tomato fruits

(2012) Jinhua Zuo et al.   BMC GENOMICS

Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)

(2012) She Tang et al.   BMC PLANT BIOLOGY

DICER-like Proteins and Their Role in Plant-herbivore Interactions in Nicotiana attenuata

(2012) Tohir Ahmadovich Bozorov et al.   Journal of Integrative Plant Biology

MicroRNA profiles and their control of male gametophyte development in rice

(2012) Hua Peng et al.   PLANT MOLECULAR BIOLOGY

Inhibition of lamina outgrowth following Solanum lycopersicum AUXIN RESPONSE FACTOR 10 (SlARF10) derepression

(2012) A. Hendelman et al.   PLANT MOLECULAR BIOLOGY

Diverse correlation patterns between microRNAs and their targets during tomato fruit development indicates different modes of microRNA actions

(2012) Sara Lopez-Gomollon et al.   PLANTA

Genome-Wide Profiling of miRNAs and Other Small Non-Coding RNAs in the Verticillium dahliae–Inoculated Cotton Roots

(2012) Zujun Yin et al.   PLoS One

Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing

(2011) Qing-Xin Song et al.   BMC PLANT BIOLOGY

Function and Evolution of a MicroRNA That Regulates a Ca2+-ATPase and Triggers the Formation of Phased Small Interfering RNAs in Tomato Reproductive Growth

(2011) Ying Wang et al.   PLANT CELL

Ethylene-responsive miRNAs in roots of Medicago truncatula identified by high-throughput sequencing at whole genome level

(2011) Lei Chen et al.   PLANT SCIENCE

Transcriptional Control of Gene Expression by MicroRNAs

(2010) Basel Khraiwesh et al.   CELL

Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis

(2010) Josh T Cuperus et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Microarray Analysis of the Abscission-Related Transcriptome in the Tomato Flower Abscission Zone in Response to Auxin Depletion

(2010) S. Meir et al.   PLANT PHYSIOLOGY

Identification and characterization of a novel miR159 target not related to MYB in tomato

(2010) Kobi Buxdorf et al.   PLANTA

Identification and characterization of microRNAs from citrus expressed sequence tags

(2010) Xiao-Meng Wu et al.   Tree Genetics & Genomes

Comparative transcriptional survey between laser-microdissected cells from laminar abscission zone and petiolar cortical tissue during ethylene-promoted abscission in citrus leaves

(2009) Javier Agustí et al.   BMC PLANT BIOLOGY

Origin, Biogenesis, and Activity of Plant MicroRNAs

(2009) Olivier Voinnet   CELL

Expression analysis of phytohormone-regulated microRNAs in rice, implying their regulation roles in plant hormone signaling

(2009) Qing Liu et al.   FEBS LETTERS

Calcium Requirement for Ethylene-Induced Abscission

(2009) Tao Xu et al.   JOURNAL OF PLANT NUTRITION

Differential Effects of Mild and Severe Cucumber mosaic virus Strains in the Perturbation of MicroRNA-Regulated Gene Expression in Tomato Map to the 3′ Sequence of RNA 2

(2009) Fabrizio Cillo et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Biochemical Evidence for Translational Repression by Arabidopsis MicroRNAs

(2009) E. Lanet et al.   PLANT CELL

Loss of RNA–Dependent RNA Polymerase 2 (RDR2) Function Causes Widespread and Unexpected Changes in the Expression of Transposons, Genes, and 24-nt Small RNAs

(2009) Yi Jia et al.   PLoS Genetics

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets

(2008) C. Addo-Quaye et al.   BIOINFORMATICS

Sorting of Small RNAs into Arabidopsis Argonaute Complexes Is Directed by the 5′ Terminal Nucleotide

(2008) Shijun Mi et al.   CELL

Endogenous siRNA and miRNA Targets Identified by Sequencing of the Arabidopsis Degradome

(2008) Charles Addo-Quaye et al.   CURRENT BIOLOGY

Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

(2008) S. Moxon et al.   GENOME RESEARCH

Ethylene-induced differential gene expression during abscission of citrus leaves

(2008) Javier Agustí et al.   JOURNAL OF EXPERIMENTAL BOTANY

Global identification of microRNA–target RNA pairs by parallel analysis of RNA ends

(2008) Marcelo A German et al.   NATURE BIOTECHNOLOGY

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

Hormone interactions during vascular development

(2008) Jan Dettmer et al.   PLANT MOLECULAR BIOLOGY