Circadian regulation of hormone signaling and plant physiology

Advances and perspectives on the use of CRISPR/Cas9 systems in plant genomics research

(2016) Degao Liu et al.   CURRENT OPINION IN PLANT BIOLOGY

MYB96 shapes the circadian gating of ABA signaling in Arabidopsis

(2016) Hong Gil Lee et al.   Scientific Reports

Photoperiodic Flowering: Time Measurement Mechanisms in Leaves

(2015) Young Hun Song et al.   Annual Review of Plant Biology

A Hierarchical Multi-oscillator Network Orchestrates the Arabidopsis Circadian System

(2015) Nozomu Takahashi et al.   CELL

ELF3-PIF4 Interaction Regulates Plant Growth Independently of the Evening Complex

(2015) Cristina Nieto et al.   CURRENT BIOLOGY

Redox rhythm reinforces the circadian clock to gate immune response

(2015) Mian Zhou et al.   NATURE

Integrating circadian dynamics with physiological processes in plants

(2015) Kathleen Greenham et al.   NATURE REVIEWS GENETICS

Mathematical modelling of the diurnal regulation of the MEP pathway inArabidopsis

(2015) Alexandra Pokhilko et al.   NEW PHYTOLOGIST

Jasmonate signalling drives time-of-day differences in susceptibility of Arabidopsis to the fungal pathogenBotrytis cinerea

(2015) Robert A. Ingle et al.   PLANT JOURNAL

A G-Box-Like Motif Is Necessary for Transcriptional Regulation by Circadian Pseudo-Response Regulators in Arabidopsis

(2015) Tiffany L. Liu et al.   PLANT PHYSIOLOGY

A circadian oscillator in the fungusBotrytis cinerearegulates virulence when infectingArabidopsis thaliana

(2015) Montserrat A. Hevia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid

(2015) Xiao-yu Zheng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide identification of CCA1 targets uncovers an expanded clock network inArabidopsis

(2015) Dawn H. Nagel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Natural selection against a circadian clock gene mutation in mice

(2015) Kamiel Spoelstra et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Downstream of the plant circadian clock: output pathways for the control of physiology and development

(2015) Sally Adams et al.   Essays in Biochemistry

Revised Morning Loops of the Arabidopsis Circadian Clock Based on Analyses of Direct Regulatory Interactions

(2015) Sally Adams et al.   PLoS One

The temporal foliar transcriptome of the perennial C3 desert plant Rhazya stricta in its natural environment

(2014) Steven A Yates et al.   BMC PLANT BIOLOGY

Clock genes and diurnal transcriptome dynamics in summer and winter in the gymnosperm Japanese cedar (Cryptomeria japonica(L.f.) D.Don)

(2014) Mine Nose et al.   BMC PLANT BIOLOGY

BR-dependent phosphorylation modulates PIF4 transcriptional activity and shapes diurnal hypocotyl growth

(2014) Stella Bernardo-García et al.   GENES & DEVELOPMENT

Connections between circadian clocks and carbon metabolism reveal species-specific effects on growth control

(2014) Lukas M. Müller et al.   JOURNAL OF EXPERIMENTAL BOTANY

Tissue-specific clocks in Arabidopsis show asymmetric coupling

(2014) Motomu Endo et al.   NATURE

Differential Control of Pre-Invasive and Post-Invasive Antibacterial Defense by the Arabidopsis Circadian Clock

(2014) Christin Korneli et al.   PLANT AND CELL PHYSIOLOGY

EARLY FLOWERING3 Regulates Flowering in Spring Barley by Mediating Gibberellin Production and FLOWERING LOCUS T Expression

(2014) S. A. Boden et al.   PLANT CELL

Differentially Phased Leaf Growth and Movements in Arabidopsis Depend on Coordinated Circadian and Light Regulation

(2014) T. Dornbusch et al.   PLANT CELL

Origin of plant auxin biosynthesis

(2014) Jipei Yue et al.   TRENDS IN PLANT SCIENCE

Rethinking Transcriptional Activation in the Arabidopsis Circadian Clock

(2014) Karl Fogelmark et al.   PLoS Computational Biology

The phosphate transporter PHT4;1 is a salicylic acid regulator likely controlled by the circadian clock protein CCA1

(2014) Guoying Wang et al.   Frontiers in Plant Science

Jasmonates: biosynthesis, perception, signal transduction and action in plant stress response, growth and development. An update to the 2007 review in Annals of Botany

(2013) C. Wasternack et al.   ANNALS OF BOTANY

Network Analysis of the MVA and MEP Pathways for Isoprenoid Synthesis

(2013) Eva Vranová et al.   Annual Review of Plant Biology

Postharvest Circadian Entrainment Enhances Crop Pest Resistance and Phytochemical Cycling

(2013) Danielle Goodspeed et al.   CURRENT BIOLOGY

Pseudomonas HopU1 modulates plant immune receptor levels by blocking the interaction of their mRNAs with GRP7

(2013) Valerie Nicaise et al.   EMBO JOURNAL

Pathogen and Circadian Controlled 1 (PCC1) regulates polar lipid content, ABA-related responses, and pathogen defence in Arabidopsis thaliana

(2013) Ricardo Mir et al.   JOURNAL OF EXPERIMENTAL BOTANY

Photosynthetic entrainment of the Arabidopsis thaliana circadian clock

(2013) Michael J. Haydon et al.   NATURE

ABA homeostasis and signaling involving multiple subcellular compartments and multiple receptors

(2013) Zheng-Yi Xu et al.   PLANT CELL REPORTS

Direct regulation of abiotic responses by the Arabidopsis circadian clock component PRR7

(2013) Tiffany Liu et al.   PLANT JOURNAL

Wheels within wheels: the plant circadian system

(2013) Polly Yingshan Hsu et al.   TRENDS IN PLANT SCIENCE

Diurnal changes in storage carbohydrate metabolism in cotyledons of the tropical tree Hymenaea courbaril L. (Leguminosae)

(2013) Lourdes Isabel Velho do Amaral et al.   Brazilian Journal of Botany

Crosstalk between the Circadian Clock and Innate Immunity in Arabidopsis

(2013) Chong Zhang et al.   PLoS Pathogens

Central and Peripheral Circadian Clocks in Mammals

(2012) Jennifer A. Mohawk et al.   Annual Review of Neuroscience

The interactions between the circadian clock and primary metabolism

(2012) Eva M Farré et al.   CURRENT OPINION IN PLANT BIOLOGY

Diel patterns of leaf and root growth: endogenous rhythmicity or environmental response?

(2012) Tom Ruts et al.   JOURNAL OF EXPERIMENTAL BOTANY

The pathway of auxin biosynthesis in plants

(2012) Y. Mano et al.   JOURNAL OF EXPERIMENTAL BOTANY

Regulation of Brassinosteroid Biosynthesis and InactivationF

(2012) Baolin Zhao et al.   Journal of Integrative Plant Biology

The regulation of plant growth by the circadian clock

(2012) E. M. Farré   PLANT BIOLOGY

TIME FOR COFFEE Represses Accumulation of the MYC2 Transcription Factor to Provide Time-of-Day Regulation of Jasmonate Signaling inArabidopsis

(2012) Jieun Shin et al.   PLANT CELL

Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling

(2012) Patricia Hornitschek et al.   PLANT JOURNAL

Technologies for systems-level analysis of specific cell types in plants

(2012) Dongxue Wang et al.   PLANT SCIENCE

Circadian Phase Has Profound Effects on Differential Expression Analysis

(2012) Polly Yingshan Hsu et al.   PLoS One

Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf

(2012) B. Wenden et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptional repressor PRR5 directly regulates clock-output pathways

(2012) N. Nakamichi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cozzarelli Prize Winner: Arabidopsis synchronizes jasmonate-mediated defense with insect circadian behavior

(2012) D. Goodspeed et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mapping the Core of the Arabidopsis Circadian Clock Defines the Network Structure of the Oscillator

(2012) W. Huang et al.   SCIENCE

Hormonal Modulation of Plant Immunity

(2011) Corné M.J. Pieterse et al.   Annual Review of Cell and Developmental Biology

FLOWERING LOCUS T Regulates Stomatal Opening

(2011) Toshinori Kinoshita et al.   CURRENT BIOLOGY

The ELF4–ELF3–LUX complex links the circadian clock to diurnal control of hypocotyl growth

(2011) Dmitri A. Nusinow et al.   NATURE

Timing of plant immune responses by a central circadian regulator

(2011) Wei Wang et al.   NATURE

PHYTOCHROME-INTERACTING FACTOR 4 and 5 (PIF4 and PIF5) Activate the Homeobox ATHB2 and Auxin-Inducible IAA29 Genes in the Coincidence Mechanism Underlying Photoperiodic Control of Plant Growth of Arabidopsis thaliana

(2011) Atsushi Kunihiro et al.   PLANT AND CELL PHYSIOLOGY

Genomic Analysis of Circadian Clock-, Light-, and Growth-Correlated Genes Reveals PHYTOCHROME-INTERACTING FACTOR5 as a Modulator of Auxin Signaling in Arabidopsis

(2011) K. Nozue et al.   PLANT PHYSIOLOGY

Global Profiling of Rice and Poplar Transcriptomes Highlights Key Conserved Circadian-Controlled Pathways and cis-Regulatory Modules

(2011) Sergei A. Filichkin et al.   PLoS One

Tissue Specific Diurnal Rhythms of Metabolites and Their Regulation during Herbivore Attack in a Native Tobacco, Nicotiana attenuata

(2011) Sang-Gyu Kim et al.   PLoS One

Defence Responses of Arabidopsis thaliana to Infection by Pseudomonas syringae Are Regulated by the Circadian Clock

(2011) Vaibhav Bhardwaj et al.   PLoS One

Circadian oscillation of gibberellin signaling in Arabidopsis

(2011) M. V. Arana et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PHYTOCHROME-INTERACTING FACTOR 4 (PIF4) regulates auxin biosynthesis at high temperature

(2011) K. A. Franklin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coordination of the maize transcriptome by a conserved circadian clock

(2010) Sadaf Khan et al.   BMC PLANT BIOLOGY

High Temperature-Mediated Adaptations in Plant Architecture Require the bHLH Transcription Factor PIF4

(2009) Maria A. Koini et al.   CURRENT BIOLOGY

Thermoperiod affects the diurnal cycle of nitrate reductase expression and activity in pineapple plants by modulating the endogenous levels of cytokinins

(2009) Luciano Freschi et al.   PHYSIOLOGIA PLANTARUM

Early genomic responses to salicylic acid in Arabidopsis

(2009) Francisca Blanco et al.   PLANT MOLECULAR BIOLOGY

Impact of clock-associated Arabidopsis pseudo-response regulators in metabolic coordination

(2009) A. Fukushima et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

REVEILLE1, a Myb-like transcription factor, integrates the circadian clock and auxin pathways

(2009) R. Rawat et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A molecular framework for light and gibberellin control of cell elongation

(2008) Miguel de Lucas et al.   NATURE

Coordinated regulation of Arabidopsis thaliana development by light and gibberellins

(2008) Suhua Feng et al.   NATURE

Comparative Transcriptome of Diurnally Oscillating Genes and Hormone-Responsive Genes in Arabidopsis thaliana: Insight into Circadian Clock-Controlled Daily Responses to Common Ambient Stresses in Plants

(2008) Takeshi Mizuno et al.   PLANT AND CELL PHYSIOLOGY

Glycine-rich RNA-binding protein7 affects abiotic stress responses by regulating stomata opening and closing inArabidopsis thaliana

(2008) Jin Sun Kim et al.   PLANT JOURNAL

Network Discovery Pipeline Elucidates Conserved Time-of-Day–Specific cis-Regulatory Modules

(2008) Todd P. Michael et al.   PLoS Genetics

The Circadian Clock inArabidopsisRoots Is a Simplified Slave Version of the Clock in Shoots

(2008) Allan B. James et al.   SCIENCE

A Morning-Specific Phytohormone Gene Expression Program underlying Rhythmic Plant Growth

(2008) Todd P Michael et al.   PLOS BIOLOGY

Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development

(2008) Michael F Covington et al.   GENOME BIOLOGY