TheLORE1insertion mutant resource

Receptor-mediated exopolysaccharide perception controls bacterial infection

(2015) Y. Kawaharada et al.   NATURE

The deubiquitinating enzyme AMSH1 is required for rhizobial infection and nodule organogenesis inLotus japonicus

(2015) Anna Małolepszy et al.   PLANT JOURNAL

CYTOKININ OXIDASE/DEHYDROGENASE3 Maintains Cytokinin Homeostasis during Root and Nodule Development inLotus japonicus

(2015) Dugald E. Reid et al.   PLANT PHYSIOLOGY

Arrested replication forks guide retrotransposon integration

(2015) J. Z. Jacobs et al.   SCIENCE

DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation

(2015) Manu J Dubin et al.   eLife

Serial number tagging reveals a prominent sequence preference of retrotransposon integration

(2014) Atreyi Ghatak Chatterjee et al.   NUCLEIC ACIDS RESEARCH

NextGenMap: fast and accurate read mapping in highly polymorphic genomes

(2013) Fritz J. Sedlazeck et al.   BIOINFORMATICS

Reconstructing de novo silencing of an active plant retrotransposon

(2013) Arturo Marí-Ordóñez et al.   NATURE GENETICS

An efficient reverse genetics platform in the model legumeMedicago truncatula

(2013) Xiaofei Cheng et al.   NEW PHYTOLOGIST

Insertional Mutagenesis Using Tnt1 Retrotransposon in Potato

(2013) S. Duangpan et al.   PLANT PHYSIOLOGY

Software for Computing and Annotating Genomic Ranges

(2013) Michael Lawrence et al.   PLoS Computational Biology

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

A nucleosomal surface defines an integration hotspot for the Saccharomyces cerevisiae Ty1 retrotransposon

(2012) J. A. Baller et al.   GENOME RESEARCH

In-depth molecular and phenotypic characterization in a rice insertion line library facilitates gene identification through reverse and forward genetics approaches

(2012) Mathias Lorieux et al.   PLANT BIOTECHNOLOGY JOURNAL

Tnt1 Retrotransposon Mutagenesis: A Tool for Soybean Functional Genomics

(2012) Y. Cui et al.   PLANT PHYSIOLOGY

Two MicroRNAs Linked to Nodule Infection and Nitrogen-Fixing Ability in the Legume Lotus japonicus

(2012) A. De Luis et al.   PLANT PHYSIOLOGY

Advanced Methylome Analysis after Bisulfite Deep Sequencing: An Example in Arabidopsis

(2012) Huy Q. Dinh et al.   PLoS One

An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress

(2011) Hidetaka Ito et al.   NATURE

Genome-wide LORE1 retrotransposon mutagenesis and high-throughput insertion detection in Lotus japonicus

(2011) Dorian Fabian Urbański et al.   PLANT JOURNAL

Establishment of a Lotus japonicus gene tagging population using the exon-targeting endogenous retrotransposon LORE1

(2011) Eigo Fukai et al.   PLANT JOURNAL

Repitools: an R package for the analysis of enrichment-based epigenomic data

(2010) A. L. Statham et al.   BIOINFORMATICS

The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana

(2010) S. Ossowski et al.   SCIENCE

Derepression of the Plant Chromovirus LORE1 Induces Germline Transposition in Regenerated Plants

(2010) Eigo Fukai et al.   PLoS Genetics

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS

BSMAP: whole genome bisulfite sequence MAPping program

(2009) Yuanxin Xi et al.   BMC BIOINFORMATICS

Bursts of retrotransposition reproduced in Arabidopsis

(2009) Sayuri Tsukahara et al.   NATURE

Selective epigenetic control of retrotransposition in Arabidopsis

(2009) Marie Mirouze et al.   NATURE

The impact of retrotransposons on human genome evolution

(2009) Richard Cordaux et al.   NATURE REVIEWS GENETICS

TILLING in Lotus japonicus Identified Large Allelic Series for Symbiosis Genes and Revealed a Bias in Functionally Defective Ethyl Methanesulfonate Alleles toward Glycine Replacements

(2009) J. Perry et al.   PLANT PHYSIOLOGY

MERE1, a Low-Copy-Number Copia-Type Retroelement in Medicago truncatula Active during Tissue Culture

(2009) A. Rakocevic et al.   PLANT PHYSIOLOGY

Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis

(2008) Ryan Lister et al.   CELL

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

(2008) Shawn J. Cokus et al.   NATURE

Large-scale insertional mutagenesis using the Tnt1 retrotransposon in the model legume Medicago truncatula

(2008) Million Tadege et al.   PLANT JOURNAL

Gibberellin controls the nodulation signaling pathway inLotus japonicus

(2008) Takaki Maekawa et al.   PLANT JOURNAL