Arrested replication forks guide retrotransposon integration

An RNA polymerase III subunit determines sites of retrotransposon integration

(2015) A. Bridier-Nahmias et al.   SCIENCE

Vulnerabilities on the Lagging-Strand Template: Opportunities for Mobile Elements

(2014) Ashwana D. Fricker et al.   Annual Review of Genetics

The essential Schizosaccharomyces pombe Pfh1 DNA helicase promotes fork movement past G-quadruplex motifs to prevent DNA damage

(2014) Nasim Sabouri et al.   BMC BIOLOGY

Serial number tagging reveals a prominent sequence preference of retrotransposon integration

(2014) Atreyi Ghatak Chatterjee et al.   NUCLEIC ACIDS RESEARCH

Human Transposon Tectonics

(2012) Kathleen H. Burns et al.   CELL

Retrotransposon Ty1 integration targets specifically positioned asymmetric nucleosomal DNA segments in tRNA hotspots

(2012) L. Mularoni et al.   GENOME RESEARCH

Retrotransposon profiling of RNA polymerase III initiation sites

(2012) X. Qi et al.   GENOME RESEARCH

A nucleosomal surface defines an integration hotspot for the Saccharomyces cerevisiae Ty1 retrotransposon

(2012) J. A. Baller et al.   GENOME RESEARCH

RAB-10-GTPase-mediated regulation of endosomal phosphatidylinositol-4,5-bisphosphate

(2012) A. Shi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nucleosomal organization of replication origins and meiotic recombination hotspots in fission yeast

(2011) Elisa de Castro et al.   EMBO JOURNAL

Evolutionary divergence of intrinsic and trans-regulated nucleosome positioning sequences reveals plastic rules for chromatin organization

(2011) A. Tsankov et al.   GENOME RESEARCH

RNAi promotes heterochromatic silencing through replication-coupled release of RNA Pol II

(2011) Mikel Zaratiegui et al.   NATURE

CENP-B preserves genome integrity at replication forks paused by retrotransposon LTR

(2010) Mikel Zaratiegui et al.   NATURE

Systematic identification of fragile sites via genome-wide location analysis of γ-H2AX

(2010) Rachel K Szilard et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Rad3ATR Decorates Critical Chromosomal Domains with γH2A to Protect Genome Integrity during S-Phase in Fission Yeast

(2010) Sophie Rozenzhak et al.   PLoS Genetics

High-throughput sequencing of retrotransposon integration provides a saturated profile of target activity in Schizosaccharomyces pombe

(2009) Y. Guo et al.   GENOME RESEARCH

Detection of gene loops by 3C in yeast

(2009) Badri Nath Singh et al.   METHODS

Enzymatic assembly of DNA molecules up to several hundred kilobases

(2009) Daniel G Gibson et al.   NATURE METHODS

The Chromodomain of Tf1 Integrase Promotes Binding to cDNA and Mediates Target Site Selection

(2008) A. G. Chatterjee et al.   JOURNAL OF VIROLOGY

Retrotransposon Tf1 Is Targeted to Pol II Promoters by Transcription Activators

(2008) Young-Eun Leem et al.   MOLECULAR CELL

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY