Unpredictability of metabolism—the key role of metabolomics science in combination with next-generation genome sequencing

Deep RNA sequencing improved the structural annotation of the Tuber melanosporum transcriptome

(2011) E. Tisserant et al.   NEW PHYTOLOGIST

Computational mass spectrometry for metabolomics: Identification of metabolites and small molecules

(2010) Steffen Neumann et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions

(2010) Jan Schellenberger et al.   BMC BIOINFORMATICS

Decision tree supported substructure prediction of metabolites from GC-MS profiles

(2010) Jan Hummel et al.   Metabolomics

Metabonomic fingerprints of fasting plasma and spot urine reveal human pre-diabetic metabolic traits

(2010) Xinjie Zhao et al.   Metabolomics

Targeted proteomics for Chlamydomonas reinhardtii combined with rapid subcellular protein fractionation, metabolomics and metabolic flux analyses

(2010) Stefanie Wienkoop et al.   Molecular BioSystems

High-throughput generation, optimization and analysis of genome-scale metabolic models

(2010) Christopher S Henry et al.   NATURE BIOTECHNOLOGY

Limitations of next-generation genome sequence assembly

(2010) Can Alkan et al.   NATURE METHODS

A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing

(2010) Cinzia Cantacessi et al.   NUCLEIC ACIDS RESEARCH

Integration of metabolomics and proteomics in molecular plant physiology - coping with the complexity by data-dimensionality reduction

(2010) Wolfram Weckwerth   PHYSIOLOGIA PLANTARUM

The Complex Genetic Architecture of the Metabolome

(2010) Eva K. F. Chan et al.   PLoS Genetics

FiehnLib: Mass Spectral and Retention Index Libraries for Metabolomics Based on Quadrupole and Time-of-Flight Gas Chromatography/Mass Spectrometry

(2009) Tobias Kind et al.   ANALYTICAL CHEMISTRY

Novel biological insights through metabolomics and 13C-flux analysis

(2009) Nicola Zamboni et al.   CURRENT OPINION IN MICROBIOLOGY

An automated GCxGC-TOF-MS protocol for batch-wise extraction and alignment of mass isotopomer matrixes from differential13C-labelling experiments: a case study for photoautotrophic-mixotrophic grownChlamydomonas reinhardtiicells

(2009) Stefan Kempa et al.   JOURNAL OF BASIC MICROBIOLOGY

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Large-Scale Assessment of the Effect of Popularity on the Reliability of Research

(2009) Thomas Pfeiffer et al.   PLoS One

Metabolomics- and Proteomics-Assisted Genome Annotation and Analysis of the Draft Metabolic Network of Chlamydomonas reinhardtii

(2008) P. May et al.   GENETICS

Integration of Metabolomic and Proteomic Phenotypes

(2008) Stefanie Wienkoop et al.   MOLECULAR & CELLULAR PROTEOMICS

The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli

(2008) Adam M Feist et al.   NATURE BIOTECHNOLOGY

A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

(2008) Markus J Herrgård et al.   NATURE BIOTECHNOLOGY

Widely Targeted Metabolomics Based on Large-Scale MS/MS Data for Elucidating Metabolite Accumulation Patterns in Plants

(2008) Yuji Sawada et al.   PLANT AND CELL PHYSIOLOGY

Discovery and revision of Arabidopsis genes by proteogenomics

(2008) N. E. Castellana et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-Scale Proteomics Reveals Arabidopsis thaliana Gene Models and Proteome Dynamics

(2008) K. Baerenfaller et al.   SCIENCE

Extending the breadth of metabolite profiling by gas chromatography coupled to mass spectrometry

(2008) Oliver Fiehn   TRAC-TRENDS IN ANALYTICAL CHEMISTRY