Inducible Transposition of a Heat-Activated Retrotransposon in Tissue Culture

A Stress-Activated Transposon in Arabidopsis Induces Transgenerational Abscisic Acid Insensitivity

(2016) Hidetaka Ito et al.   Scientific Reports

LTR retrotransposons, handy hitchhikers of plant regulation and stress response

(2015) Marie-Angèle Grandbastien   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Controlled activation of retrotransposition for plant breeding

(2015) Jerzy Paszkowski   CURRENT OPINION IN BIOTECHNOLOGY

Competency for shoot regeneration from Arabidopsis root explants is regulated by DNA methylation

(2015) Or Shemer et al.   PLANT SCIENCE

Involvement of Plant Stem Cells or Stem Cell-Like Cells in Dedifferentiation

(2015) Fangwei Jiang et al.   Frontiers in Plant Science

BAGY2 Retrotransposon Analyses in Barley Calli Cultures and Regenerated Plantlets

(2014) Sibel Yilmaz et al.   BIOCHEMICAL GENETICS

How a Retrotransposon Exploits the Plant's Heat Stress Response for Its Activation

(2014) Vladimir V. Cavrak et al.   PLoS Genetics

Methylome reorganization during in vitro dedifferentiation and regeneration of Populus trichocarpa

(2013) Kelly Vining et al.   BMC PLANT BIOLOGY

Evolution of the ONSEN retrotransposon family activated upon heat stress in Brassicaceae

(2013) Hidetaka Ito et al.   GENE

Mechanism for full-length RNA processing of Arabidopsis genes containing intragenic heterochromatin

(2013) Hidetoshi Saze et al.   Nature Communications

Positional correlation analysis improves reconstruction of full-length transcripts and alternative isoforms from noisy array signals or short reads

(2012) Shuji Kawaguchi et al.   BIOINFORMATICS

How important are transposons for plant evolution?

(2012) Damon Lisch   NATURE REVIEWS GENETICS

DNA methylation and genome rearrangement characteristics of phase change in cultured shoots of Sequoia sempervirens

(2012) Li-Chun Huang et al.   PHYSIOLOGIA PLANTARUM

Regenerant Arabidopsis Lineages Display a Distinct Genome-Wide Spectrum of Mutations Conferring Variant Phenotypes

(2011) Caifu Jiang et al.   CURRENT BIOLOGY

High-resolution mapping of open chromatin in the rice genome

(2011) W. Zhang et al.   GENOME RESEARCH

An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress

(2011) Hidetaka Ito et al.   NATURE

The effects of heat induction and the siRNA biogenesis pathway on the transgenerational transposition of ONSEN, a copia-like retrotransposon in Arabidopsis thaliana

(2011) W. Matsunaga et al.   PLANT AND CELL PHYSIOLOGY

Tissue culture-induced flower-color changes in Saintpaulia caused by excision of the transposon inserted in the flavonoid 3′, 5′ hydroxylase (F3′5′H) promoter

(2011) Mitsuru Sato et al.   PLANT CELL REPORTS

Recent progress in the understanding of tissue culture-induced genome level changes in plants and potential applications

(2011) Anjanasree K. Neelakandan et al.   PLANT CELL REPORTS

Somaclonal Variation Is Induced De Novo via the Tissue Culture Process: A Study Quantifying Mutated Cells in Saintpaulia

(2011) Mitsuru Sato et al.   PLoS One

DNA Methylation and Histone Modifications Regulate De Novo Shoot Regeneration in Arabidopsis by Modulating WUSCHEL Expression and Auxin Signaling

(2011) Wei Li et al.   PLoS Genetics

Genome-wide analysis of endogenous abscisic acid-mediated transcription in dry and imbibed seeds of Arabidopsis using tiling arrays

(2010) Masanori Okamoto et al.   PLANT JOURNAL

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Arabidopsis Transcriptome Analysis under Drought, Cold, High-Salinity and ABA Treatment Conditions using a Tiling Array

(2008) A. Matsui et al.   PLANT AND CELL PHYSIOLOGY

Analysis of the protein expression profiling during rice callus differentiation under different plant hormone conditions

(2008) Lan Yin et al.   PLANT MOLECULAR BIOLOGY

Promoter DNA Hypermethylation and Gene Repression in Undifferentiated Arabidopsis Cells

(2008) María Berdasco et al.   PLoS One

PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis

(2008) R. A. Mosher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA