Recent progress in the understanding of tissue culture-induced genome level changes in plants and potential applications

Tissue culture-induced genomic alteration in maize (Zea mays) inbred lines and F1 hybrids

(2011) X. Yu et al.   ANNALS OF APPLIED BIOLOGY

Regenerant Arabidopsis Lineages Display a Distinct Genome-Wide Spectrum of Mutations Conferring Variant Phenotypes

(2011) Caifu Jiang et al.   CURRENT BIOLOGY

The AP2/ERF Transcription Factor WIND1 Controls Cell Dedifferentiation in Arabidopsis

(2011) Akira Iwase et al.   CURRENT BIOLOGY

Variations in BARE-1 insertion patterns in barley callus cultures

(2011) C. Evrensel et al.   GENETICS AND MOLECULAR RESEARCH

CUC2 as an early marker for regeneration competence in Arabidopsis root explants

(2011) Hans Motte et al.   JOURNAL OF PLANT PHYSIOLOGY

The CKH2/PKL Chromatin Remodeling Factor Negatively Regulates Cytokinin Responses in Arabidopsis Calli

(2011) Kaori Furuta et al.   PLANT AND CELL PHYSIOLOGY

Extending SILAC to Proteomics of Plant Cell Lines

(2011) Wolfgang Schütz et al.   PLANT CELL

Efficient sweet pepper transformation mediated by the BABY BOOM transcription factor

(2011) Iris Heidmann et al.   PLANT CELL REPORTS

Tissue culture-induced flower-color changes in Saintpaulia caused by excision of the transposon inserted in the flavonoid 3′, 5′ hydroxylase (F3′5′H) promoter

(2011) Mitsuru Sato et al.   PLANT CELL REPORTS

MicroRNAs Regulate the Timing of Embryo Maturation in Arabidopsis

(2011) M. R. Willmann et al.   PLANT PHYSIOLOGY

Somaclonal Variation Is Induced De Novo via the Tissue Culture Process: A Study Quantifying Mutated Cells in Saintpaulia

(2011) Mitsuru Sato et al.   PLoS One

A Fasciclin-Like Arabinogalactan-Protein (FLA) Mutant of Arabidopsis thaliana, fla1, Shows Defects in Shoot Regeneration

(2011) Kim L. Johnson et al.   PLoS One

MicroRNA misregulation: an overlooked factor generating somaclonal variation?

(2011) J. Rodriguez-Enriquez et al.   TRENDS IN PLANT SCIENCE

Polycomb Repressive Complex 2 Controls the Embryo-to-Seedling Phase Transition

(2011) Daniel Bouyer et al.   PLoS Genetics

DNA Methylation and Histone Modifications Regulate De Novo Shoot Regeneration in Arabidopsis by Modulating WUSCHEL Expression and Auxin Signaling

(2011) Wei Li et al.   PLoS Genetics

Four abiotic stress-induced miRNA families differentially regulated in the embryogenic and non-embryogenic callus tissues of Larix leptolepis

(2010) Shougong Zhang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Transcriptional activity of transposable elements in maize

(2010) Carlos M Vicient   BMC GENOMICS

Shoot differentiation from protocorm callus cultures of Vanilla planifolia (Orchidaceae): proteomic and metabolic responses at early stage

(2010) Tony L Palama et al.   BMC PLANT BIOLOGY

The Arabidopsis PRC1-like ring-finger proteins are necessary for repression of embryonic traits during vegetative growth

(2010) Donghong Chen et al.   CELL RESEARCH

Miniature Inverted-Repeat Transposable Elements of Stowaway Are Active in Potato

(2010) Masaki Momose et al.   GENETICS

Tissue Culture-Induced Novel Epialleles of a Myb Transcription Factor Encoded by pericarp color1 in Maize

(2010) Y. Rhee et al.   GENETICS

Characterization of expression dynamics of WOX homeodomain transcription factors during somatic embryogenesis in Vitis vinifera

(2010) Giorgio Gambino et al.   JOURNAL OF EXPERIMENTAL BOTANY

Modulation of embryo-forming capacity in culture through the expression of Brassica genes involved in the regulation of the shoot apical meristem

(2010) Mohamed Elhiti et al.   JOURNAL OF EXPERIMENTAL BOTANY

microRNA, seeds, and Darwin?: diverse function of miRNA in seed biology and plant responses to stress

(2010) R. C. Martin et al.   JOURNAL OF EXPERIMENTAL BOTANY

Progressive erosion of genetic and epigenetic variation in callus-derived cocoa (Theobroma cacao) plants

(2010) Carlos M. Rodríguez López et al.   NEW PHYTOLOGIST

miR390,Arabidopsis TAS3tasiRNAs, and TheirAUXIN RESPONSE FACTORTargets Define an Autoregulatory Network Quantitatively Regulating Lateral Root Growth

(2010) Elena Marin et al.   PLANT CELL

Epigenetics in plant tissue culture

(2010) M. J. M. Smulders et al.   PLANT GROWTH REGULATION

Somaclonal variation in plants: causes and detection methods

(2010) Michael W. Bairu et al.   PLANT GROWTH REGULATION

Control of somatic embryogenesis and embryo development by AP2 transcription factors

(2010) Souad El Ouakfaoui et al.   PLANT MOLECULAR BIOLOGY

Arabidopsis EMBRYOMAKER encoding an AP2 domain transcription factor plays a key role in developmental change from vegetative to embryonic phase

(2010) Ryo Tsuwamoto et al.   PLANT MOLECULAR BIOLOGY

Stage and tissue-specific modulation of ten conserved miRNAs and their targets during somatic embryogenesis of Valencia sweet orange

(2010) Xiao-Meng Wu et al.   PLANTA

Putative Arabidopsis Transcriptional Adaptor Protein (PROPORZ1) is required to modulate histone acetylation in response to auxin

(2010) J. M. Anzola et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Initiation of dedifferentiation and structural changes in in vitro cultured petiole of Arabidopsis thaliana

(2010) Yang Yu et al.   PROTOPLASMA

Lodgepole pine: the first evidence of seed-based somatic embryogenesis and the expression of embryogenesis marker genes in shoot bud cultures of adult trees

(2010) S.-Y. Park et al.   TREE PHYSIOLOGY

Integrated analysis of microRNA and mRNA expression profiles in physiological myelopoiesis: role of hsa-mir-299-5p in CD34+ progenitor cells commitment

(2010) E Tenedini et al.   Cell Death & Disease

Derepression of the Plant Chromovirus LORE1 Induces Germline Transposition in Regenerated Plants

(2010) Eigo Fukai et al.   PLoS Genetics

Ectopic expression of LEAFY COTYLEDON1-LIKE gene and localized auxin accumulation mark embryogenic competence in epiphyllous plants of Helianthus annuus × H. tuberosus

(2009) A. Chiappetta et al.   ANNALS OF BOTANY

Genome scale transcriptome analysis of shoot organogenesis in Populus

(2009) Yanghuan Bao et al.   BMC PLANT BIOLOGY

Tissue culture-induced transpositional activity of mPing is correlated with cytosine methylation in rice

(2009) Frédéric Ngezahayo et al.   BMC PLANT BIOLOGY

Possible involvement of DNA methylation on expression regulation of carrot LEC1 gene in its 5′-upstream region

(2009) Tomiko Shibukawa et al.   GENE

Chromatin remodeling in plant development

(2009) Jose A. Jarillo et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

The spaceflight environment can induce transpositional activation of multiple endogenous transposable elements in a genotype-dependent manner in rice

(2009) Likun Long et al.   JOURNAL OF PLANT PHYSIOLOGY

Proteomic analysis of the secretome of rice calli

(2009) Won Kyong Cho et al.   PHYSIOLOGIA PLANTARUM

Global Identification of Targets of the Arabidopsis MADS Domain Protein AGAMOUS-Like15

(2009) Y. Zheng et al.   PLANT CELL

LEAFY COTYLEDON2 gene expression and auxin treatment in relation to embryogenic capacity of Arabidopsis somatic cells

(2009) Agnieszka Ledwoń et al.   PLANT CELL REPORTS

Genetic and epigenetic instability of amplification-prone sequences of a novel B chromosome induced by tissue culture in Plantago lagopus L.

(2009) Gurmeet Kour et al.   PLANT CELL REPORTS

Tissue culture-induced variation at simple sequence repeats in sorghum (Sorghum bicolor L.) is genotype-dependent and associated with down-regulated expression of a mismatch repair gene, MLH3

(2009) Meishan Zhang et al.   PLANT CELL REPORTS

Identification of QTL underlying somatic embryogenesis capacity of immature embryos in soybean (Glycine max (L.) Merr.)

(2009) Xiaohui Song et al.   PLANT CELL REPORTS

Identification of an active LTR retrotransposon in rice

(2009) Nathalie Picault et al.   PLANT JOURNAL

Auxin-inducedWUSexpression is essential for embryonic stem cell renewal during somatic embryogenesis in Arabidopsis

(2009) Ying H. Su et al.   PLANT JOURNAL

MERE1, a Low-Copy-Number Copia-Type Retroelement in Medicago truncatula Active during Tissue Culture

(2009) A. Rakocevic et al.   PLANT PHYSIOLOGY

A novel method for induction of plant regeneration via somatic embryogenesis

(2009) Wei Deng et al.   PLANT SCIENCE

The association of homeobox gene expression with stem cell formation and morphogenesis in cultured Medicago truncatula

(2009) S.-K. Chen et al.   PLANTA

CHD3 Proteins and Polycomb Group Proteins Antagonistically Determine Cell Identity in Arabidopsis

(2009) Ernst Aichinger et al.   PLoS Genetics

Flow cytometric investigations of diploid and tetraploid plants and in vitro cultures ofDatura stramoniumandHyoscyamus niger

(2008) Jost Weber et al.   CYTOMETRY PART A

Identification of a high frequency transposon induced by tissue culture, nDaiZ, a member of the hAT family in rice

(2008) Jian Huang et al.   GENOMICS

Detection of epigenetic variation in tissue-culture-derived plants of Doritaenopsis by methylation-sensitive amplification polymorphism (MSAP) analysis

(2008) S. Y. Park et al.   IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-PLANT

Proteomics of weakly bound cell wall proteins in rice calli

(2008) Xiong-Yan Chen et al.   JOURNAL OF PLANT PHYSIOLOGY

Plant meristems: CLAVATA3/ESR-related signaling in the shoot apical meristem and the root apical meristem

(2008) Hiroki Miwa et al.   JOURNAL OF PLANT RESEARCH

Systematic Secretome Analyses of Rice Leaf and Seed Callus Suspension-Cultured Cells: Workflow Development and Establishment of High-Density Two-Dimensional Gel Reference Maps

(2008) Young-Ho Jung et al.   JOURNAL OF PROTEOME RESEARCH

Detection of somaclonal variation of cotton (Gossypium hirsutum) using cytogenetics, flow cytometry and molecular markers

(2008) Shuangxia Jin et al.   PLANT CELL REPORTS

Detection of a SERK-like gene in coconut and analysis of its expression during the formation of embryogenic callus and somatic embryos

(2008) M. T. Pérez-Núñez et al.   PLANT CELL REPORTS

Characterization of VvSERK1, VvSERK2, VvSERK3 and VvL1L genes and their expression during somatic embryogenesis of grapevine (Vitis vinifera L.)

(2008) Paul Schellenbaum et al.   PLANT CELL REPORTS

Characterization of three somatic embryogenesis receptor kinase genes from wheat, Triticum aestivum

(2008) Bhumica Singla et al.   PLANT CELL REPORTS

Limited tissue culture-induced mutations and linked epigenetic modifications in F1hybrids of sorghum pure lines are accompanied by increased transcription of DNA methyltransferases and 5-methylcytosine glycosylases

(2008) Meishan Zhang et al.   PLANT JOURNAL

Disruption of a novel gene for a NAC-domain protein in rice confers resistance toRice dwarf virus

(2008) Motoyasu Yoshii et al.   PLANT JOURNAL

Pluripotency of Arabidopsis xylem pericycle underlies shoot regeneration from root and hypocotyl explants grownin vitro

(2008) Ramzy Atta et al.   PLANT JOURNAL

BABY BOOM target genes provide diverse entry points into cell proliferation and cell growth pathways

(2008) Paul Passarinho et al.   PLANT MOLECULAR BIOLOGY

Conifer WOX-related homeodomain transcription factors, developmental consideration and expression dynamic of WOX2 during Picea abies somatic embryogenesis

(2008) Joakim Palovaara et al.   PLANT MOLECULAR BIOLOGY

Analysis of the protein expression profiling during rice callus differentiation under different plant hormone conditions

(2008) Lan Yin et al.   PLANT MOLECULAR BIOLOGY

The Transcription Factor MtSERF1 of the ERF Subfamily Identified by Transcriptional Profiling Is Required for Somatic Embryogenesis Induced by Auxin Plus Cytokinin in Medicago truncatula

(2008) F. R. Mantiri et al.   PLANT PHYSIOLOGY

The MADS-Domain Transcriptional Regulator AGAMOUS-LIKE15 Promotes Somatic Embryo Development in Arabidopsis and Soybean

(2008) D. Thakare et al.   PLANT PHYSIOLOGY

Role of AUX1 in the control of organ identity during in vitro organogenesis and in mediating tissue specific auxin and cytokinin interaction in Arabidopsis

(2008) Aparna Kakani et al.   PLANTA

Promoter DNA Hypermethylation and Gene Repression in Undifferentiated Arabidopsis Cells

(2008) María Berdasco et al.   PLoS One

Epigenomic Consequences of Immortalized Plant Cell Suspension Culture

(2008) Milos Tanurdzic et al.   PLOS BIOLOGY