Exploring the mechanochemical cycle of dynein motor proteins: structural evidence of crucial intermediates

Strain Mediated Adaptation Is Key for Myosin Mechanochemistry: Discovering General Rules for Motor Activity

(2016) Biman Jana et al.   PLoS Computational Biology

A model for the coordinated stepping of cytoplasmic dynein

(2014) X.Y. Zhao et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Circovirus Transport Proceeds via Direct Interaction of the Cytoplasmic Dynein IC1 Subunit with the Viral Capsid Protein

(2014) Jingjing Cao et al.   JOURNAL OF VIROLOGY

Structure of human cytoplasmic dynein-2 primed for its power stroke

(2014) Helgo Schmidt et al.   NATURE

Structural mechanism of the dynein power stroke

(2014) Jianfeng Lin et al.   NATURE CELL BIOLOGY

SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information

(2014) Marco Biasini et al.   NUCLEIC ACIDS RESEARCH

From structure to function: the convergence of structure based models and co-evolutionary information

(2014) Biman Jana et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Tension on the linker gates the ATP-dependent release of dynein from microtubules

(2014) Frank B. Cleary et al.   Nature Communications

Big steps toward understanding dynein

(2013) Masahide Kikkawa   JOURNAL OF CELL BIOLOGY

Crystal clear insights into how the dynein motor moves

(2013) A. P. Carter   JOURNAL OF CELL SCIENCE

Functions and mechanics of dynein motor proteins

(2013) Anthony J. Roberts et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Characterization of the free-energy landscapes of proteins by NMR-guided metadynamics

(2013) D. Granata et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Native contacts determine protein folding mechanisms in atomistic simulations

(2013) R. B. Best et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coarse-grained modeling of the structural states and transition underlying the powerstroke of dynein motor domain

(2012) Wenjun Zheng   JOURNAL OF CHEMICAL PHYSICS

On Reaction Coordinate Optimality

(2012) Sergei V. Krivov   Journal of Chemical Theory and Computation

The Shadow Map: A General Contact Definition for Capturing the Dynamics of Biomolecular Folding and Function

(2012) Jeffrey K. Noel et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Structural biology of cytoplasmic and axonemal dyneins

(2012) Takashi Ishikawa   JOURNAL OF STRUCTURAL BIOLOGY

The 2.8 Å crystal structure of the dynein motor domain

(2012) Takahide Kon et al.   NATURE

Insights into dynein motor domain function from a 3.3-Å crystal structure

(2012) Helgo Schmidt et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Dynein achieves processive motion using both stochastic and coordinated stepping

(2012) Weihong Qiu et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Biomolecular dynamics: order–disorder transitions and energy landscapes

(2012) Paul C Whitford et al.   REPORTS ON PROGRESS IN PHYSICS

ATP-Driven Remodeling of the Linker Domain in the Dynein Motor

(2012) Anthony J. Roberts et al.   STRUCTURE

The Origin of Minus-end Directionality and Mechanochemistry of Ncd Motors

(2012) Biman Jana et al.   PLoS Computational Biology

The mechanism of dynein motility: Insight from crystal structures of the motor domain

(2011) Carol Cho et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

A Physical Model Reveals the Mechanochemistry Responsible for Dynein's Processive Motion

(2011) Denis Tsygankov et al.   BIOPHYSICAL JOURNAL

X-ray structure of a functional full-length dynein motor domain

(2011) Takahide Kon et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Crystal Structure of the Dynein Motor Domain

(2011) A. P. Carter et al.   SCIENCE

Automated comparative protein structure modeling with SWISS-MODEL and Swiss-PdbViewer: A historical perspective

(2010) Nicolas Guex et al.   ELECTROPHORESIS

Role of Water in the Enzymatic Catalysis: Study of ATP + AMP → 2ADP Conversion by Adenylate Kinase

(2010) Bharat V. Adkar et al.   JOURNAL OF PHYSICAL CHEMISTRY A

SMOG@ctbp: simplified deployment of structure-based models in GROMACS

(2010) Jeffrey K. Noel et al.   NUCLEIC ACIDS RESEARCH

AAA+ Ring and Linker Swing Mechanism in the Dynein Motor

(2009) Anthony J. Roberts et al.   CELL

Walking the walk: how kinesin and dynein coordinate their steps

(2009) Arne Gennerich et al.   CURRENT OPINION IN CELL BIOLOGY

Role of conformational dynamics in kinetics of an enzymatic cycle in a nonequilibrium steady state

(2009) Wei Min et al.   JOURNAL OF CHEMICAL PHYSICS

Kinesin superfamily motor proteins and intracellular transport

(2009) Nobutaka Hirokawa et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Multiscale approaches for studying energy transduction in dynein

(2009) Adrian W. R. Serohijos et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Ligand-induced global transitions in the catalytic domain of protein kinase A

(2009) C. Hyeon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular mechanism of force generation by dynein, a molecular motor belonging to the AAA+ family

(2008) Naoki Numata et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

The SWISS-MODEL Repository and associated resources

(2008) F. Kiefer et al.   NUCLEIC ACIDS RESEARCH

Model for the unidirectional motion of a dynein molecule

(2008) Sutapa Mukherji   PHYSICAL REVIEW E

Two-Dimensional Reaction Free Energy Surfaces of Catalytic Reaction:  Effects of Protein Conformational Dynamics on Enzyme Catalysis†

(2007) Wei Min et al.   JOURNAL OF PHYSICAL CHEMISTRY B