From Mfd to TRCF and Back Again-A Perspective on Bacterial Transcription-coupled Nucleotide Excision Repair

Transcription-coupled repair of UV damage in the halophilic archaea

(2016) Nicole Stantial et al.   DNA REPAIR

Reconstruction of bacterial transcription-coupled repair at single-molecule resolution

(2016) Jun Fan et al.   NATURE

ppGpp couples transcription to DNA repair in E. coli

(2016) V. Kamarthapu et al.   SCIENCE

The bacterial DNA repair protein Mfd confers resistance to the host nitrogen immune response

(2016) Elisabeth Guillemet et al.   Scientific Reports

Increased toxin expression in a Clostridium difficile mfd mutant

(2015) Stephanie E. Willing et al.   BMC MICROBIOLOGY

Rethinking transcription coupled DNA repair

(2015) Venu Kamarthapu et al.   CURRENT OPINION IN MICROBIOLOGY

Transcription coupled nucleotide excision repair in the yeast Saccharomyces cerevisiae : The ambiguous role of Rad26

(2015) Shisheng Li   DNA REPAIR

Tissue specific response to DNA damage: C. elegans as role model

(2015) Hannes Lans et al.   DNA REPAIR

A dynamic DNA-repair complex observed by correlative single-molecule nanomanipulation and fluorescence

(2015) Evan T Graves et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

An underlying mechanism for the increased mutagenesis of lagging-strand genes inBacillus subtilis

(2015) Samuel Million-Weaver et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A dynamic DNA-repair complex observed by correlative single-molecule nanomanipulation and fluorescence

(2015) Evan T Graves et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

CarD uses a minor groove wedge mechanism to stabilize the RNA polymerase open promoter complex

(2015) Brian Bae et al.   eLife

Stringent response processes suppress DNA damage sensitivity caused by deficiency in full-length translation initiation factor 2 or PriA helicase

(2014) K. Elizabeth Madison et al.   MOLECULAR MICROBIOLOGY

UvrD facilitates DNA repair by pulling RNA polymerase backwards

(2014) Vitaly Epshtein et al.   NATURE

Understanding nucleotide excision repair and its roles in cancer and ageing

(2014) Jurgen A. Marteijn et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Defining functional DNA elements in the human genome

(2014) M. Kellis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stalled transcription complexes promote DNA repair at a distance

(2014) N. M. Haines et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNA polymerase between lesion bypass and DNA repair

(2013) Alexandra M. Deaconescu   CELLULAR AND MOLECULAR LIFE SCIENCES

Transcriptional mutagenesis and its potential roles in the etiology of cancer and bacterial antibiotic resistance

(2013) Jordan F. Morreall et al.   JOURNAL OF CELLULAR PHYSIOLOGY

Mitochondrial CSA and CSB: Protein interactions and protection from ageing associated DNA mutations

(2013) York Kamenisch et al.   MECHANISMS OF AGEING AND DEVELOPMENT

Cockayne syndrome group B (CSB) protein: At the crossroads of transcriptional networks

(2013) Renier Vélez-Cruz et al.   MECHANISMS OF AGEING AND DEVELOPMENT

The Mechanism of E. coli RNA Polymerase Regulation by ppGpp Is Suggested by the Structure of their Complex

(2013) Yuhong Zuo et al.   MOLECULAR CELL

Transcriptional coupling of DNA repair in sporulatingBacillus subtiliscells

(2013) Fernando H. Ramírez-Guadiana et al.   MOLECULAR MICROBIOLOGY

Accelerated gene evolution through replication–transcription conflicts

(2013) Sandip Paul et al.   NATURE

Small-angle X-ray scattering reveals architecture and A2B2stoichiometry of the UvrA-UvrB DNA damage sensor

(2013) Danaya Pakotiprapha et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Prokaryotic Nucleotide Excision Repair

(2013) C. Kisker et al.   Cold Spring Harbor Perspectives in Biology

Mammalian Transcription-Coupled Excision Repair

(2013) W. Vermeulen et al.   Cold Spring Harbor Perspectives in Biology

DNA Base Damage by Reactive Oxygen Species, Oxidizing Agents, and UV Radiation

(2013) J. Cadet et al.   Cold Spring Harbor Perspectives in Biology

Mutational Processes Molding the Genomes of 21 Breast Cancers

(2012) Serena Nik-Zainal et al.   CELL

The Life History of 21 Breast Cancers

(2012) Serena Nik-Zainal et al.   CELL

Interaction of CarD with RNA Polymerase Mediates Mycobacterium tuberculosis Viability, Rifampin Resistance, and Pathogenesis

(2012) L. A. Weiss et al.   JOURNAL OF BACTERIOLOGY

Initiation of transcription-coupled repair characterized at single-molecule resolution

(2012) Kévin Howan et al.   NATURE

Nucleotide excision repair (NER) machinery recruitment by the transcription-repair coupling factor involves unmasking of a conserved intramolecular interface

(2012) A. M. Deaconescu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Replication Fork Reversal after Replication–Transcription Collision

(2012) Anne L. De Septenville et al.   PLoS Genetics

Linking RNA Polymerase Backtracking to Genome Instability in E. coli

(2011) Dipak Dutta et al.   CELL

Age-Related Neuronal Degeneration: Complementary Roles of Nucleotide Excision Repair and Transcription-Coupled Repair in Preventing Neuropathology

(2011) Dick Jaarsma et al.   PLoS Genetics

5′-Single-stranded/duplex DNA junctions are loading sites for E. coli UvrD translocase

(2010) Eric J Tomko et al.   EMBO JOURNAL

Collaborative Dynamic DNA Scanning by Nucleotide Excision Repair Proteins Investigated by Single- Molecule Imaging of Quantum-Dot-Labeled Proteins

(2010) Neil M. Kad et al.   MOLECULAR CELL

Regulation and Rate Enhancement during Transcription-Coupled DNA Repair

(2010) Laura Manelyte et al.   MOLECULAR CELL

UV-Induced Association of the CSB Remodeling Protein with Chromatin Requires ATP-Dependent Relief of N-Terminal Autorepression

(2010) Robert J. Lake et al.   MOLECULAR CELL

Roles for the transcription elongation factor NusA in both DNA repair and damage tolerance pathways in Escherichia coli

(2010) S. E. Cohen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Direct Restart of a Replication Fork Stalled by a Head-On RNA Polymerase

(2010) R. T. Pomerantz et al.   SCIENCE

Involvement of Global Genome Repair, Transcription Coupled Repair, and Chromatin Remodeling in UV DNA Damage Response Changes during Development

(2010) Hannes Lans et al.   PLoS Genetics

The Helicobacter pylori Mfd protein is important for antibiotic resistance and DNA repair

(2009) Gin Hyug Lee et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

A Structural Model for the Damage-sensing Complex in Bacterial Nucleotide Excision Repair

(2009) Danaya Pakotiprapha et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Structural and Mutational Analyses of Deinococcus radiodurans UvrA2 Provide Insight into DNA Binding and Damage Recognition by UvrAs

(2009) Joanna Timmins et al.   STRUCTURE

Cell-type-specific consequences of nucleotide excision repair deficiencies: Embryonic stem cells versus fibroblasts

(2008) H DEWAARD et al.   DNA REPAIR

Key Role of Mfd in the Development of Fluoroquinolone Resistance in Campylobacter jejuni

(2008) Jing Han et al.   PLoS Pathogens