Microevolutionary traits and comparative population genomics of the emerging pathogenic fungusCryptococcus gattii

Recognition of seven species in the Cryptococcus gattii/Cryptococcus neoformans species complex

(2015) Ferry Hagen et al.   FUNGAL GENETICS AND BIOLOGY

Evolutionary insights into host–pathogen interactions from mammalian sequence data

(2015) Manuela Sironi et al.   NATURE REVIEWS GENETICS

Genome Evolution and Innovation across the Four Major Lineages of Cryptococcus gattii

(2015) Rhys A. Farrer et al.   mBio

Recent introduction of a chytrid fungus endangers Western Palearctic salamanders

(2014) A. Martel et al.   SCIENCE

Microevolution During Serial Mouse Passage Demonstrates FRE3 as a Virulence Adaptation Gene in Cryptococcus neoformans

(2014) G. Hu et al.   mBio

Highly Recombinant VGII Cryptococcus gattii Population Develops Clonal Outbreak Clusters through both Sexual Macroevolution and Asexual Microevolution

(2014) R. B. Billmyre et al.   mBio

Cryptococcus gattii in North American Pacific Northwest: Whole-Population Genome Analysis Provides Insights into Species Evolution and Dispersal

(2014) D. M. Engelthaler et al.   mBio

‘Division of labour’ in response to host oxidative burst drives a fatal Cryptococcus gattii outbreak

(2014) Kerstin Voelz et al.   Nature Communications

Microevolution of Candida albicans in Macrophages Restores Filamentation in a Nonfilamentous Mutant

(2014) Anja Wartenberg et al.   PLoS Genetics

One Small Step for a Yeast - Microevolution within Macrophages Renders Candida glabrata Hypervirulent Due to a Single Point Mutation

(2014) Sascha Brunke et al.   PLoS Pathogens

Cryptococcus gattii VGIII Isolates Causing Infections in HIV/AIDS Patients in Southern California: Identification of the Local Environmental Source as Arboreal

(2014) Deborah J. Springer et al.   PLoS Pathogens

BCKDH: The Missing Link in Apicomplexan Mitochondrial Metabolism Is Required for Full Virulence of Toxoplasma gondii and Plasmodium berghei

(2014) Rebecca D. Oppenheim et al.   PLoS Pathogens

Using False Discovery Rates to Benchmark SNP-callers in next-generation sequencing projects

(2013) Rhys A. Farrer et al.   Scientific Reports

Chromosomal Copy Number Variation, Selection and Uneven Rates of Recombination Reveal Cryptic Genome Diversity Linked to Pathogenicity

(2013) Rhys A. Farrer et al.   PLoS Genetics

Transmission of Hypervirulence Traits via Sexual Reproduction within and between Lineages of the Human Fungal Pathogen Cryptococcus gattii

(2013) Kerstin Voelz et al.   PLoS Genetics

Fungal zinc metabolism and its connections to virulence

(2013) Charley C. Staats et al.   Frontiers in Cellular and Infection Microbiology

The Cryptococcus neoformans Capsule: a Sword and a Shield

(2012) T. R. O'Meara et al.   CLINICAL MICROBIOLOGY REVIEWS

A defect in ATP-citrate lyase links acetyl-CoA production, virulence factor elaboration and virulence inCryptococcus neoformans

(2012) Emma J. Griffiths et al.   MOLECULAR MICROBIOLOGY

Emerging fungal threats to animal, plant and ecosystem health

(2012) Matthew C. Fisher et al.   NATURE

A mixed-model approach for genome-wide association studies of correlated traits in structured populations

(2012) Arthur Korte et al.   NATURE GENETICS

The Emergence of Ug99 Races of the Stem Rust Fungus is a Threat to World Wheat Production

(2011) Ravi P. Singh et al.   Annual Review of Phytopathology

GamA is a eukaryotic-like glucoamylase responsible for glycogen- and starch-degrading activity of Legionella pneumophila

(2011) Vroni Herrmann et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Cryptococcus gattii: an emerging fungal pathogen infecting humans and animals

(2011) Edmond J. Byrnes et al.   MICROBES AND INFECTION

Whole Genome Sequence Analysis of Cryptococcus gattii from the Pacific Northwest Reveals Unexpected Diversity

(2011) John D. Gillece et al.   PLoS One

Genome Variation in Cryptococcus gattii, an Emerging Pathogen of Immunocompetent Hosts

(2011) C. A. D'Souza et al.   mBio

A Diverse Population of Cryptococcus gattii Molecular Type VGIII in Southern Californian HIV/AIDS Patients

(2011) Edmond J. Byrnes et al.   PLoS Pathogens

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Genome Evolution Following Host Jumps in the Irish Potato Famine Pathogen Lineage

(2010) S. Raffaele et al.   SCIENCE

The Set3/Hos2 Histone Deacetylase Complex Attenuates cAMP/PKA Signaling to Regulate Morphogenesis and Virulence of Candida albicans

(2010) Denes Hnisz et al.   PLoS Pathogens

Emergence and Pathogenicity of Highly Virulent Cryptococcus gattii Genotypes in the Northwest United States

(2010) Edmond J. Byrnes et al.   PLoS Pathogens

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Molecular Evidence That the Range of the Vancouver Island Outbreak ofCryptococcus gattiiInfection Has Expanded into the Pacific Northwest in the United States

(2009) Edmond J. Byrnes III et al.   JOURNAL OF INFECTIOUS DISEASES

The fatal fungal outbreak on Vancouver Island is characterized by enhanced intracellular parasitism driven by mitochondrial regulation

(2009) H. Ma et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Citrate Uptake intoPectobacterium atrosepticumIs Critical for Bacterial Virulence

(2008) Claude Urbany et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The Population Genetics of dN/dS

(2008) Sergey Kryazhimskiy et al.   PLoS Genetics