Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics

Evolution, energy landscapes and the paradoxes of protein folding

(2015) Peter G. Wolynes   BIOCHIMIE

Molecular stripping in theNF-κB/IκB/DNAgenetic regulatory network

(2015) Davit A. Potoyan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Contribution of a mutational hot spot to hemoglobin adaptation in high-altitude Andean house wrens

(2015) Spencer C. Galen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Electrostatics, structure prediction, and the energy landscapes for protein folding and binding

(2015) Min-Yeh Tsai et al.   PROTEIN SCIENCE

Lessons in Protein Design from Combined Evolution and Conformational Dynamics

(2015) Swarnendu Tripathi et al.   Scientific Reports

Structural and Energetic Characterization of the Ankyrin Repeat Protein Family

(2015) R. Gonzalo Parra et al.   PLoS Computational Biology

Learning To Fold Proteins Using Energy Landscape Theory

(2014) Nicholas P. Schafer et al.   ISRAEL JOURNAL OF CHEMISTRY

Energy landscapes of functional proteins are inherently risky

(2014) Anne Gershenson et al.   Nature Chemical Biology

Understanding the frustration arising from the competition between function, misfolding, and aggregation in a globular protein

(2014) Stefano Gianni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Frustration in biomolecules

(2014) Diego U. Ferreiro et al.   QUARTERLY REVIEWS OF BIOPHYSICS

Funneling and frustration in the energy landscapes of some designed and simplified proteins

(2013) Ha H. Truong et al.   JOURNAL OF CHEMICAL PHYSICS

Correlated Motions and Residual Frustration in Thrombin

(2013) Brian Fuglestad et al.   JOURNAL OF PHYSICAL CHEMISTRY B

SOD1 exhibits allosteric frustration to facilitate metal binding affinity

(2013) A. Das et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sequence-function-stability relationships in proteins from datasets of functionally annotated variants: The case of TEM β-lactamases

(2012) Luciano A. Abriata et al.   FEBS LETTERS

AWSEM-MD: Protein Structure Prediction Using Coarse-Grained Physical Potentials and Bioinformatically Based Local Structure Biasing

(2012) Aram Davtyan et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Protein frustratometer: a tool to localize energetic frustration in protein molecules

(2012) M. Jenik et al.   NUCLEIC ACIDS RESEARCH

Predictive energy landscapes for protein-protein association

(2012) W. Zheng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Energy Landscape Analysis of Cancer Mutations in Protein Kinases

(2011) Anshuman Dixit et al.   PLoS One

On the role of frustration in the energy landscapes of allosteric proteins

(2011) Diego U. Ferreiro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA