Engineering and characterization of fluorogenic glycine riboswitches

Cooperativity, allostery and synergism in ligand binding to riboswitches

(2015) Alla Peselis et al.   BIOCHIMIE

RNA-Based Fluorescent Biosensors for Live Cell Imaging of Second Messenger Cyclic di-AMP

(2015) Colleen A. Kellenberger et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Systematic reconstruction of binding and stability landscapes of the fluorogenic aptamer spinach

(2015) Simon Ketterer et al.   NUCLEIC ACIDS RESEARCH

Automated physics-based design of synthetic riboswitches from diverse RNA aptamers

(2015) Amin Espah Borujeni et al.   NUCLEIC ACIDS RESEARCH

Imaging metabolite dynamics in living cells using a Spinach-based riboswitch

(2015) Mingxu You et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Unexpected versatility in bacterial riboswitches

(2015) J.R. Mellin et al.   TRENDS IN GENETICS

Rapid RNA–ligand interaction analysis through high-information content conformational and stability landscapes

(2015) Nathan J. Baird et al.   Nature Communications

Synthetic riboswitches — A tool comes of age

(2014) Florian Groher et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Themes and variations in riboswitch structure and function

(2014) Alla Peselis et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

DNA-rescuable allosteric inhibition of aptamer II ligand affinity by aptamer I element in the shortened Vibrio cholerae glycine riboswitch

(2014) Eileen M. Sherman et al.   JOURNAL OF BIOCHEMISTRY

Plug-and-Play Fluorophores Extend the Spectral Properties of Spinach

(2014) Wenjiao Song et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

A general design strategy for protein-responsive riboswitches in mammalian cells

(2014) Simon Ausländer et al.   NATURE METHODS

Ligand binding by the tandem glycine riboswitch depends on aptamer dimerization but not double ligand occupancy

(2014) Karen M. Ruff et al.   RNA

RNA-Based Fluorescent Biosensors for Live Cell Imaging of Second Messengers Cyclic di-GMP and Cyclic AMP-GMP

(2013) Colleen A. Kellenberger et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Metabolite Recognition Principles and Molecular Mechanisms Underlying Riboswitch Function

(2012) Alexander Serganov et al.   Annual Review of Biophysics

Nanomolar fluorescent detection of c-di-GMP using a modular aptamer strategy

(2012) Shizuka Nakayama et al.   CHEMICAL COMMUNICATIONS

Systematic reconstruction of RNA functional motifs with high-throughput microfluidics

(2012) Lance Martin et al.   NATURE METHODS

A high-throughput, quantitative cell-based screen for efficient tailoring of RNA device activity

(2012) Joe C. Liang et al.   NUCLEIC ACIDS RESEARCH

An energetically beneficial leader-linker interaction abolishes ligand-binding cooperativity in glycine riboswitches

(2012) E. M. Sherman et al.   RNA

Fluorescence Imaging of Cellular Metabolites with RNA

(2012) Jeremy S. Paige et al.   SCIENCE

Patch oligodeoxynucleotide synthesis (POS): a novel method for synthesis of long DNA sequences and full-length genes

(2011) Guanghua Yang et al.   BIOTECHNOLOGY LETTERS

Structural Basis of Cooperative Ligand Binding by the Glycine Riboswitch

(2011) Ethan B. Butler et al.   CHEMISTRY & BIOLOGY

Prospects for Riboswitch Discovery and Analysis

(2011) Ronald R. Breaker   MOLECULAR CELL

RNA Mimics of Green Fluorescent Protein

(2011) J. S. Paige et al.   SCIENCE

Ribozymes and Riboswitches: Modulation of RNA Function by Small Molecules

(2010) Jinwei Zhang et al.   BIOCHEMISTRY

Structural Insights into Ligand Recognition by a Sensing Domain of the Cooperative Glycine Riboswitch

(2010) Lili Huang et al.   MOLECULAR CELL

Identification of a tertiary interaction important for cooperative ligand binding by the glycine riboswitch

(2010) T. V. Erion et al.   RNA

Dissecting electrostatic screening, specific ion binding, and ligand binding in an energetic model for glycine riboswitch folding

(2010) J. Lipfert et al.   RNA

Amino acid recognition and gene regulation by riboswitches

(2009) Alexander Serganov et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

The Vienna RNA Websuite

(2008) A. R. Gruber et al.   NUCLEIC ACIDS RESEARCH