Light behind the curtain: photoregulation of nuclear architecture and chromatin dynamics in plants

Put your 3D glasses on: plant chromatin is on show

(2016) Natalia Y. Rodriguez-Granados et al.   JOURNAL OF EXPERIMENTAL BOTANY

Regulation of transcription by the Arabidopsis UVR8 photoreceptor involves a specific histone modification

(2016) Christos N. Velanis et al.   PLANT MOLECULAR BIOLOGY

COP1 is required for UV-B–induced nuclear accumulation of the UVR8 photoreceptor

(2016) Ruohe Yin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MicroProtein-Mediated Recruitment of CONSTANS into a TOPLESS Trimeric Complex Represses Flowering in Arabidopsis

(2016) Moritz Graeff et al.   PLoS Genetics

P1 Epigenetic Regulation in Leaves of High Altitude Maize Landraces: Effect of UV-B Radiation

(2016) Sebastián P. Rius et al.   Frontiers in Plant Science

Transcription factors dynamically control the spatial organization of the yeast genome

(2016) Carlo Randise-Hinchliff et al.   Nucleus

Transcription factors dynamically control the spatial organization of the yeast genome

(2016) Carlo Randise-Hinchliff et al.   Nucleus

A novel single cell method to identify the genetic composition at a single nuclear body

(2016) David Anchel et al.   Scientific Reports

Identification of Gene Positioning Factors Using High-Throughput Imaging Mapping

(2015) Sigal Shachar et al.   CELL

Integration of Light and Photoperiodic Signaling in Transcriptional Nuclear Foci

(2015) Eirini Kaiserli et al.   DEVELOPMENTAL CELL

Multidimensional proteomics for cell biology

(2015) Mark Larance et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

HEMERA Couples the Proteolysis and Transcriptional Activity of PHYTOCHROME INTERACTING FACTORs in Arabidopsis Photomorphogenesis

(2015) Yongjian Qiu et al.   PLANT CELL

Histone H2A/H2B chaperones: from molecules to chromatin-based functions in plant growth and development

(2015) Wangbin Zhou et al.   PLANT JOURNAL

Light signaling controls nuclear architecture reorganization during seedling establishment

(2015) Clara Bourbousse et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants

(2015) Ying Li et al.   GENOME BIOLOGY

Gene Expression Regulation in Photomorphogenesis from the Perspective of the Central Dogma

(2014) Shu-Hsing Wu   Annual Review of Plant Biology

The Histone Variant H2A.W Defines Heterochromatin and Promotes Chromatin Condensation in Arabidopsis

(2014) Ramesh Yelagandula et al.   CELL

Genome-wide analysis of local chromatin packing inArabidopsis thaliana

(2014) Congmao Wang et al.   GENOME RESEARCH

The impact of chromatin dynamics on plant light responses and circadian clock function

(2014) Fredy Barneche et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcriptional Repression by Histone Deacetylases in Plants

(2014) Xuncheng Liu et al.   Molecular Plant

The Chromatin-Remodeling Factor PICKLE Integrates Brassinosteroid and Gibberellin Signaling during Skotomorphogenic Growth in Arabidopsis

(2014) D. Zhang et al.   PLANT CELL

Arabidopsis DE-ETIOLATED1 Represses Photomorphogenesis by Positively Regulating Phytochrome-Interacting Factors in the Dark

(2014) J. Dong et al.   PLANT CELL

A mutually assured destruction mechanism attenuates light signaling in Arabidopsis

(2014) W. Ni et al.   SCIENCE

Light-regulated gene repositioning in Arabidopsis

(2014) Chun-Miao Feng et al.   Nature Communications

Control of early seedling development by BES1/TPL/HDA19-mediated epigenetic regulation of ABI3

(2014) Hojin Ryu et al.   Nature Communications

TOPLESS mediates brassinosteroid-induced transcriptional repression through interaction with BZR1

(2014) Eunkyoo Oh et al.   Nature Communications

Arabidopsis replacement histone variant H3.3 occupies promoters of regulated genes

(2014) Huan Shu et al.   GENOME BIOLOGY

Genome-wide analysis of histone modifiers in tomato: gaining an insight into their developmental roles

(2013) Riccardo Aiese Cigliano et al.   BMC GENOMICS

Mechanisms and Functions of ATP-Dependent Chromatin-Remodeling Enzymes

(2013) Geeta J. Narlikar et al.   CELL

Physical clustering of FLC alleles during Polycomb-mediated epigenetic silencing in vernalization

(2013) S. Rosa et al.   GENES & DEVELOPMENT

The Hierarchy of the 3D Genome

(2013) Johan H. Gibcus et al.   MOLECULAR CELL

Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data

(2013) Job Dekker et al.   NATURE REVIEWS GENETICS

ArabidopsisChromatin Remodeling Factor PICKLE Interacts with Transcription Factor HY5 to Regulate Hypocotyl Cell Elongation

(2013) Yanjun Jing et al.   PLANT CELL

PHYTOCHROME INTERACTING FACTOR3 Associates with the Histone Deacetylase HDA15 in Repression of Chlorophyll Biosynthesis and Photosynthesis in Etiolated Arabidopsis Seedlings

(2013) X. Liu et al.   PLANT CELL

Structural insights into the histone H1-nucleosome complex

(2013) B.-R. Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

R-Loop Stabilization Represses Antisense Transcription at the Arabidopsis FLC Locus

(2013) Q. Sun et al.   SCIENCE

A Quartet of PIF bHLH Factors Provides a Transcriptionally Centered Signaling Hub That Regulates Seedling Morphogenesis through Differential Expression-Patterning of Shared Target Genes in Arabidopsis

(2013) Yu Zhang et al.   PLoS Genetics

Step-Wise Methylation of Histone H3K9 Positions Heterochromatin at the Nuclear Periphery

(2012) Benjamin D. Towbin et al.   CELL

APETALA2 negatively regulates multiple floral organ identity genes in Arabidopsis by recruiting the co-repressor TOPLESS and the histone deacetylase HDA19

(2012) N. T. Krogan et al.   DEVELOPMENT

Control of Seed Germination by Light-Induced Histone Arginine Demethylation Activity

(2012) Jung-Nam Cho et al.   DEVELOPMENTAL CELL

H2B monoubiquitylation is a 5′-enriched active transcription mark and correlates with exon–intron structure in human cells

(2012) Inkyung Jung et al.   GENOME RESEARCH

Shedding Light on Large-Scale Chromatin Reorganization in Arabidopsis thaliana

(2012) Martijn van Zanten et al.   Molecular Plant

Interaction with plant transcription factors can mediate nuclear import of phytochrome B

(2012) A. Pfeiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptional corepressor TOPLESS complexes with pseudoresponse regulator proteins and histone deacetylases to regulate circadian transcription

(2012) L. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

C-terminal region of the UV-B photoreceptor UVR8 initiates signaling through interaction with the COP1 protein

(2012) C. Cloix et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

UV-B photoreceptor-mediated signalling in plants

(2012) Marc Heijde et al.   TRENDS IN PLANT SCIENCE

Histone H2B Monoubiquitination Facilitates the Rapid Modulation of Gene Expression during Arabidopsis Photomorphogenesis

(2012) Clara Bourbousse et al.   PLoS Genetics

Deposition of Histone Variant H2A.Z within Gene Bodies Regulates Responsive Genes

(2012) Devin Coleman-Derr et al.   PLoS Genetics

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

(2011) François Roudier et al.   EMBO JOURNAL

EAR motif-mediated transcriptional repression in plants

(2011) Sateesh Kagale et al.   Epigenetics

Requirement of ATM-Dependent Monoubiquitylation of Histone H2B for Timely Repair of DNA Double-Strand Breaks

(2011) Lilach Moyal et al.   MOLECULAR CELL

Arabidopsis REF6 is a histone H3 lysine 27 demethylase

(2011) Falong Lu et al.   NATURE GENETICS

Rapid and Reversible Light-Mediated Chromatin Modifications of ArabidopsisPhytochrome ALocus

(2011) In-Cheol Jang et al.   PLANT CELL

Genome-wide analysis of the SET DOMAIN GROUP family in Grapevine

(2011) Felipe Aquea et al.   PLANT CELL REPORTS

Photobodies in Light Signaling

(2011) E. K. Van Buskirk et al.   PLANT PHYSIOLOGY

Phytochrome signaling mechanisms and the control of plant development

(2011) Meng Chen et al.   TRENDS IN CELL BIOLOGY

Histone Methylation in Higher Plants

(2010) Chunyan Liu et al.   Annual Review of Plant Biology

Arabidopsis HEMERA/pTAC12 Initiates Photomorphogenesis by Phytochromes

(2010) Meng Chen et al.   CELL

Histone variants — ancient wrap artists of the epigenome

(2010) Paul B. Talbert et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Arabidopsis seed secrets unravelled after a decade of genetic and omics-driven research

(2010) Helen North et al.   PLANT JOURNAL

Genome-wide mapping of cytosine methylation revealed dynamic DNA methylation patterns associated with genes and centromeres in rice

(2010) Huihuang Yan et al.   PLANT JOURNAL

Epigenetic chromatin modifiers in barley: III. Isolation and characterization of the barley GNAT-MYST family of histone acetyltransferases and responses to exogenous ABA

(2010) Dimitra Papaefthimiou et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Why so repressed? Turning off transcription during plant growth and development

(2009) Naden T Krogan et al.   CURRENT OPINION IN PLANT BIOLOGY

Interaction of COP1 and UVR8 regulates UV-B-induced photomorphogenesis and stress acclimation in Arabidopsis

(2009) Jean-Jacques Favory et al.   EMBO JOURNAL

A Tale of Tails: How Histone Tails Mediate Chromatin Compaction in Different Salt and Linker Histone Environments†

(2009) Gaurav Arya et al.   JOURNAL OF PHYSICAL CHEMISTRY A

Dynamic Landscapes of Four Histone Modifications during Deetiolation in Arabidopsis

(2009) J.-B. F. Charron et al.   PLANT CELL

PHYTOCHROME B and HISTONE DEACETYLASE 6 Control Light-Induced Chromatin Compaction in Arabidopsis thaliana

(2009) Federico Tessadori et al.   PLoS Genetics

Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana

(2009) Xiaoyu Zhang et al.   GENOME BIOLOGY

The Meaning of Gene Positioning

(2008) Takumi Takizawa et al.   CELL

Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks

(2008) Daniel Zilberman et al.   NATURE

Fluorescence nanoscopy by ground-state depletion and single-molecule return

(2008) Jonas Fölling et al.   NATURE METHODS

SOMNUS, a CCCH-Type Zinc Finger Protein in Arabidopsis, Negatively Regulates Light-Dependent Seed Germination Downstream of PIL5

(2008) D. H. Kim et al.   PLANT CELL

Histone Acetylation and Chromatin Remodeling Are Required for UV-B-Dependent Transcriptional Activation of Regulated Genes in Maize

(2008) P. Casati et al.   PLANT CELL

Histone Modifications and Expression of Light-Regulated Genes in Arabidopsis Are Cooperatively Influenced by Changing Light Conditions

(2008) L. Guo et al.   PLANT PHYSIOLOGY

Histone H2B Deubiquitination Is Required for Transcriptional Activation of FLOWERING LOCUS C and for Proper Control of Flowering in Arabidopsis

(2008) R. J. Schmitz et al.   PLANT PHYSIOLOGY

Genome-Wide Association of Histone H3 Lysine Nine Methylation with CHG DNA Methylation in Arabidopsis thaliana

(2008) Yana V. Bernatavichute et al.   PLoS One

A zinc knuckle protein that negatively controls morning-specific growth in Arabidopsis thaliana

(2008) O. Loudet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interaction of the Arabidopsis UV-B-Specific Signaling Component UVR8 with Chromatin

(2007) Catherine Cloix et al.   Molecular Plant