The role of APOBEC3-induced mutations in the differential evolution of monkeypox virus

The changing epidemiology of human monkeypox—A potential threat? A systematic review

(2022) Eveline M. Bunge et al.   PLoS Neglected Tropical Diseases

Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus

(2022) Joana Isidro et al.   NATURE MEDICINE

Multiple lineages of monkeypox virus detected in the United States, 2021–2022

(2022) Crystal M. Gigante et al.   SCIENCE

Structure of monkeypox virus DNA polymerase holoenzyme

(2022) Qi Peng et al.   SCIENCE

The evolutionary dynamics of viruses: virion release strategies, time delays and fitness minima

(2021) Jennifer S Lord et al.   Virus Evolution

Human APOBEC3 Variations and Viral Infection

(2021) Shiva Sadeghpour et al.   Viruses-Basel

Codon usage bias

(2021) Sujatha Thankeswaran Parvathy et al.   MOLECULAR BIOLOGY REPORTS

A hybrid stochastic-deterministic approach to explore multiple infection and evolution in HIV

(2021) Jesse Kreger et al.   PLoS Computational Biology

Evolution of Synonymous Codon Usage Bias in West African and Central African Strains of Monkeypox Virus

(2018) Sudeesh Karumathil et al.   Evolutionary Bioinformatics

Julia: A Fresh Approach to Numerical Computing

(2017) Jeff Bezanson et al.   SIAM REVIEW

Extensively Parameterized Mutation–Selection Models Reliably Capture Site-Specific Selective Constraint

(2016) Stephanie J. Spielman et al.   MOLECULAR BIOLOGY AND EVOLUTION

Variation in the molecular clock of primates

(2016) Priya Moorjani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An Experimentally Informed Evolutionary Model Improves Phylogenetic Fit to Divergent Lactamase Homologs

(2014) Jesse D. Bloom   MOLECULAR BIOLOGY AND EVOLUTION

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Role of Altered Nucleotide Excision Repair and UVB-Induced DNA Damage in Melanomagenesis

(2013) Timothy Budden et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Phylogenetic Models of Molecular Evolution: Next-Generation Data, Fit, and Performance

(2013) David Posada   JOURNAL OF MOLECULAR EVOLUTION

Estimating Selection on Synonymous Codon Usage from Noisy Experimental Data

(2013) Edward W.J. Wallace et al.   MOLECULAR BIOLOGY AND EVOLUTION

APOBEC3B is an enzymatic source of mutation in breast cancer

(2013) Michael B. Burns et al.   NATURE

Dynamic Mutation-Selection Balance as an Evolutionary Attractor

(2012) S. Goyal et al.   GENETICS

Modeling HIV-1 Drug Resistance as Episodic Directional Selection

(2012) Ben Murrell et al.   PLoS Computational Biology

Human and Rhesus APOBEC3D, APOBEC3F, APOBEC3G, and APOBEC3H Demonstrate a Conserved Capacity To Restrict Vif-Deficient HIV-1

(2011) J. F. Hultquist et al.   JOURNAL OF VIROLOGY

APOBEC3 proteins mediate the clearance of foreign DNA from human cells

(2010) Mark D Stenglein et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Molecular evolution of synonymous codon usage in Populus

(2009) Pär K Ingvarsson   BMC EVOLUTIONARY BIOLOGY

The infinite sites model of genome evolution

(2008) J. Ma et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The traveling-wave approach to asexual evolution: Muller's ratchet and speed of adaptation

(2007) Igor M. Rouzine et al.   THEORETICAL POPULATION BIOLOGY