Multi-Omics Approaches in Plant–Microbe Interactions Hold Enormous Promise for Sustainable Agriculture

Understanding the plant-microbe interactions in environments exposed to abiotic stresses: An overview

(2023) Ayomide Emmanuel Fadiji et al.   MICROBIOLOGICAL RESEARCH

Recent applications of metabolomics in plant breeding

(2022) Nozomu Sakurai   BREEDING SCIENCE

Current understanding of plant-microbe interaction through the lenses of multi-omics approaches and their benefits in sustainable agriculture

(2022) Deepti Diwan et al.   MICROBIOLOGICAL RESEARCH

Actinobacteria–Plant Interactions in Alleviating Abiotic Stress

(2022) Manik Prabhu Narsing Rao et al.   Plants-Basel

Multi-omics approaches for deciphering the microbial modulation of plants' genetic potentials: What's known and what's next?

(2022) Febri Doni et al.   Rhizosphere

Root endophyte induced plant thermotolerance by constitutive chromatin modification at heat stress memory gene loci

(2021) Kirti Shekhawat et al.   EMBO REPORTS

Enabling sustainable agriculture through understanding and enhancement of microbiomes

(2021) Pankaj Trivedi et al.   NEW PHYTOLOGIST

Microbes as Biofertilizers, a Potential Approach for Sustainable Crop Production

(2021) Shaista Nosheen et al.   Sustainability

Salt-induced recruitment of specific root-associated bacterial consortium capable of enhancing plant adaptability to salt stress

(2021) Hong Li et al.   ISME Journal

Combination of arbuscular mycorrhizal fungi and phosphate solubilizing bacteria on growth and production of Helianthus tuberosus under field condition

(2021) Sabaiporn Nacoon et al.   Scientific Reports

Genomic characterization and computational phenotyping of nitrogen-fixing bacteria isolated from Colombian sugarcane fields

(2021) Luz K. Medina-Cordoba et al.   Scientific Reports

Field multi-omics analysis reveals a close association between bacterial communities and mineral properties in the soybean rhizosphere

(2021) Shinichi Yamazaki et al.   Scientific Reports

Holo-omics for deciphering plant-microbiome interactions

(2021) Ling Xu et al.   Microbiome

Inoculation of plant growth promoting bacteria and arbuscular mycorrhizal fungi improve chickpea performance under water deficit conditions

(2021) Sara Laranjeira et al.   APPLIED SOIL ECOLOGY

Engineering the plant microbiota in the context of the theory of ecological communities

(2021) Asmaâ Agoussar et al.   CURRENT OPINION IN BIOTECHNOLOGY

Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics

(2021) Ling Xu et al.   Nature Communications

Improvement of Soil Microbial Diversity through Sustainable Agricultural Practices and Its Evaluation by -Omics Approaches: A Perspective for the Environment, Food Quality and Human Safety

(2021) Marta Bertola et al.   Microorganisms

Comprehensive evaluation of mapping complex traits in wheat using genome-wide association studies

(2021) Dinesh K. Saini et al.   MOLECULAR BREEDING

Promoting Model Systems of Microbiota–Medicinal Plant Interactions

(2020) Valentina Maggini et al.   TRENDS IN PLANT SCIENCE

Modulation of the Root Microbiome by Plant Molecules: The Basis for Targeted Disease Suppression and Plant Growth Promotion

(2020) Alberto Pascale et al.   Frontiers in Plant Science

Thermotolerance effect of plant growth-promoting Bacillus cereus SA1 on soybean during heat stress

(2020) Muhammad Aaqil Khan et al.   BMC MICROBIOLOGY

Microbiome Engineering: Synthetic Biology of Plant-Associated Microbiomes in Sustainable Agriculture

(2020) Jing Ke et al.   TRENDS IN BIOTECHNOLOGY

Relevance of Plant Growth Promoting Microorganisms and Their Derived Compounds, in the Face of Climate Change

(2020) Judith Naamala et al.   Agronomy-Basel

A multi-omics approach to solving problems in plant disease ecology

(2020) Sharifa G. Crandall et al.   PLoS One

Integrating multi-omics data for crop improvement

(2020) Federico Scossa et al.   JOURNAL OF PLANT PHYSIOLOGY

Balancing trade-offs between biotic and abiotic stress responses through leaf age-dependent variation in stress hormone cross-talk

(2019) Matthias L. Berens et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant specialized metabolites modulate root microbiomes

(2019) Pengchao Wang et al.   Science China-Life Sciences

Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome

(2019) Víctor J. Carrión et al.   SCIENCE

The Soil-Borne Legacy

(2018) Peter A.H.M. Bakker et al.   CELL

Plant–Microbe Interaction 2017—The Good, the Bad and the Diverse

(2018) Jan Schirawski et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Disease-induced assemblage of a plant-beneficial bacterial consortium

(2018) Roeland L. Berendsen et al.   ISME Journal

Drought delays development of the sorghum root microbiome and enriches for monoderm bacteria

(2018) Ling Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assembly and ecological function of the root microbiome across angiosperm plant species

(2018) Connor R. Fitzpatrick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Understanding and Designing the Strategies for the Microbe-Mediated Remediation of Environmental Contaminants Using Omics Approaches

(2018) Muneer A. Malla et al.   Frontiers in Microbiology

Legacy of land use history determines reprogramming of plant physiology by soil microbiome

(2018) Xiaogang Li et al.   ISME Journal

Soil-Plant-Microbe Interactions in Stressed Agriculture Management: A Review

(2017) Shobhit Raj VIMAL et al.   PEDOSPHERE

Combined use of network inference tools identifies ecologically meaningful bacterial associations in a paddy soil

(2017) Honggui Wang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Resistance and resilience of root fungal communities to water limitation in a temperate agroecosystem

(2017) Jessie R. Furze et al.   Ecology and Evolution

Microbiome engineering: Current applications and its future

(2017) Jee Loon Foo et al.   Biotechnology Journal

Perspectives and Challenges of Microbial Application for Crop Improvement

(2017) Salme Timmusk et al.   Frontiers in Plant Science

Tiny Microbes, Big Yields: enhancing food crop production with biological solutions

(2017) Pankaj Trivedi et al.   Microbial Biotechnology

Microbial interactions: ecology in a molecular perspective

(2016) Raíssa Mesquita Braga et al.   BRAZILIAN JOURNAL OF MICROBIOLOGY

Insight into how organic amendments can shape the soil microbiome in long-term field experiments as revealed by network analysis

(2016) Ning Ling et al.   SOIL BIOLOGY & BIOCHEMISTRY

An Underground Revolution: Biodiversity and Soil Ecological Engineering for Agricultural Sustainability

(2016) S. Franz Bender et al.   TRENDS IN ECOLOGY & EVOLUTION

Manipulating Bacterial Communities by in situ Microbiome Engineering

(2016) Ravi U. Sheth et al.   TRENDS IN GENETICS

Microbial interactions in the rhizosphere: beneficial influences of plant growth-promoting rhizobacteria on nutrient acquisition process. A review

(2015) Youry Pii et al.   BIOLOGY AND FERTILITY OF SOILS

The plant microbiome explored: implications for experimental botany

(2015) Gabriele Berg et al.   JOURNAL OF EXPERIMENTAL BOTANY

Arbuscular mycorrhizal symbiosis induces strigolactone biosynthesis under drought and improves drought tolerance in lettuce and tomato

(2015) Juan Manuel Ruiz-Lozano et al.   PLANT CELL AND ENVIRONMENT

Reduced dependence of rhizosphere microbiome on plant-derived carbon in 32-year long-term inorganic and organic fertilized soils

(2015) Chao Ai et al.   SOIL BIOLOGY & BIOCHEMISTRY

Engineering Microbiomes to Improve Plant and Animal Health

(2015) U.G. Mueller et al.   TRENDS IN MICROBIOLOGY

How tree roots respond to drought

(2015) Ivano Brunner et al.   Frontiers in Plant Science

Biofertilizers function as key player in sustainable agriculture by improving soil fertility, plant tolerance and crop productivity

(2014) Deepak Bhardwaj et al.   Microbial Cell Factories

Increasing phytoremediation efficiency and reliability using novel omics approaches

(2014) Terrence H. Bell et al.   TRENDS IN BIOTECHNOLOGY

A new PGPR co-inoculated with Bradyrhizobium japonicum enhances soybean nodulation

(2013) Oscar Masciarelli et al.   MICROBIOLOGICAL RESEARCH

Plant Virus Metagenomics: Biodiversity and Ecology

(2012) Marilyn J. Roossinck   Annual Review of Genetics

Changes in soil microbial biomass and functional diversity with a nitrogen gradient in soil columns

(2012) Fangliang Li et al.   APPLIED SOIL ECOLOGY

Perspectives of plant-associated microbes in heavy metal phytoremediation

(2012) M. Rajkumar et al.   BIOTECHNOLOGY ADVANCES

Long-Term Balanced Fertilization Decreases Arbuscular Mycorrhizal Fungal Diversity in an Arable Soil in North China Revealed by 454 Pyrosequencing

(2012) Xiangui Lin et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Leaf microbiota in an agroecosystem: spatiotemporal variation in bacterial community composition on field-grown lettuce

(2012) Gurdeep Rastogi et al.   ISME Journal

Burkholderia phytofirmansPsJN Acclimates Grapevine to Cold by Modulating Carbohydrate Metabolism

(2012) Olivier Fernandez et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Biochemical and physiological responses of rice (Oryza sativa L.) as influenced by Trichoderma harzianum under drought stress

(2012) Nandani Shukla et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Inducing salt tolerance in mung bean through coinoculation with rhizobia and plant-growth-promoting rhizobacteria containing 1-aminocyclopropane-1-carboxylate deaminase

(2011) Maqshoof Ahmad et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

(2011) Claudia Knief et al.   ISME Journal

Improved Salinity Tolerance of Arachis hypogaea (L.) by the Interaction of Halotolerant Plant-Growth-Promoting Rhizobacteria

(2011) Pushp Sheel Shukla et al.   JOURNAL OF PLANT GROWTH REGULATION

Functional Characteristics of an Endophyte Community Colonizing Rice Roots as Revealed by Metagenomic Analysis

(2011) A. Sessitsch et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Burkholderia phytofirmansPsJN PrimesVitis viniferaL. and Confers a Better Tolerance to Low Nonfreezing Temperatures

(2011) Andreas Theocharis et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Impact of long-term fertilization practices on the abundance and composition of soil bacterial communities in Northeast China

(2010) Ju-Pei Shen et al.   APPLIED SOIL ECOLOGY

Plant Immunity: It's the Hormones Talking, But What Do They Say?

(2010) A. Verhage et al.   PLANT PHYSIOLOGY

Arbuscular mycorrhizal fungi in alleviation of salt stress: a review

(2009) Heikham Evelin et al.   ANNALS OF BOTANY

Plant–microbe interactions promoting plant growth and health: perspectives for controlled use of microorganisms in agriculture

(2009) Gabriele Berg   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Plant-microbe-soil interactions in the rhizosphere: an evolutionary perspective

(2009) Hans Lambers et al.   PLANT AND SOIL

Competition for Light Causes Plant Biodiversity Loss After Eutrophication

(2009) Y. Hautier et al.   SCIENCE

Exploiting plant–microbe partnerships to improve biomass production and remediation

(2009) Nele Weyens et al.   TRENDS IN BIOTECHNOLOGY

Microdiversity of Burkholderiales associated with mycorrhizal and nonmycorrhizal roots of Medicago truncatula

(2008) Pierre Offre et al.   FEMS MICROBIOLOGY ECOLOGY

Shoot, but not root, competition reduces community diversity in experimental mesocosms

(2008) Eric G. Lamb et al.   JOURNAL OF ECOLOGY

Role of plant hormones in plant defence responses

(2008) Rajendra Bari et al.   PLANT MOLECULAR BIOLOGY