Engineering the plant microbiota in the context of the theory of ecological communities

Plant Compartments and Developmental Stages Modulate the Balance between Niche-Based and Neutral Processes in Soybean Microbiome

(2021) I. Moroenyane et al.   MICROBIAL ECOLOGY

Designing a multi-species inoculant of phosphate rock-solubilizing bacteria compatible with arbuscular mycorrhizae for plant growth promotion in low-P soil amended with PR

(2020) Paola Magallon-Servin et al.   BIOLOGY AND FERTILITY OF SOILS

Do plant–microbe interactions support the Stress Gradient Hypothesis?

(2020) Aaron S. David et al.   ECOLOGY

Four decades of soil water stress history together with host genotype constrain the response of the wheat microbiome to soil moisture

(2020) Hamed Azarbad et al.   FEMS MICROBIOLOGY ECOLOGY

Biological nitrogen fixation in maize: optimizing nitrogenase expression in a root-associated diazotroph

(2020) Sarah E Bloch et al.   JOURNAL OF EXPERIMENTAL BOTANY

The effect of microbial inoculant origin on the rhizosphere bacterial community composition and plant growth-promotion

(2020) Yian Gu et al.   PLANT AND SOIL

Plant microbiome analysis after Metarhizium amendment reveals increases in abundance of plant growth-promoting organisms and maintenance of disease-suppressive soil

(2020) Larissa Barelli et al.   PLoS One

A Gaseous Milieu: Extending the Boundaries of the Rhizosphere

(2020) Anne de la Porte et al.   TRENDS IN MICROBIOLOGY

Consortium of endophyte and rhizosphere phosphate solubilizing bacteria improves phosphorous use efficiency in wheat cultivars in phosphorus deficient soils

(2020) Somayeh Emami et al.   Rhizosphere

Infochemicals in terrestrial plants and seaweed holobionts: current and future trends

(2020) Ruth Schmidt et al.   NEW PHYTOLOGIST

Deliberate introduction of invisible invaders: A critical appraisal of the impact of microbial inoculants on soil microbial communities

(2020) Panji Cahya Mawarda et al.   SOIL BIOLOGY & BIOCHEMISTRY

Rhizospheric Plant–Microbe Interactions: miRNAs as a Key Mediator

(2020) Harriet Middleton et al.   TRENDS IN PLANT SCIENCE

Field H2 infusion alters bacterial and archaeal communities but not fungal communities nor nitrogen cycle gene abundance

(2020) Xiao-Bo Wang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Metagenomic engineering of the mammalian gut microbiome in situ

(2019) Carlotta Ronda et al.   NATURE METHODS

A water stress-adapted inoculum affects rhizosphere fungi, but not bacteria nor wheat

(2019) Charlotte Giard-Laliberté et al.   FEMS MICROBIOLOGY ECOLOGY

Engineering banana endosphere microbiome to improve Fusarium wilt resistance in banana

(2019) Yupei Liu et al.   Microbiome

Engineered root bacteria release plant-available phosphate from phytate

(2019) Christine N. Shulse et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Changes in root‐exudate‐induced respiration reveal a novel mechanism through which drought affects ecosystem carbon cycling

(2019) Franciska T. Vries et al.   NEW PHYTOLOGIST

Root exudates: from plant to rhizosphere and beyond

(2019) Vicente Vives-Peris et al.   PLANT CELL REPORTS

Small RNAs – Big Players in Plant-Microbe Interactions

(2019) Chien-Yu Huang et al.   Cell Host & Microbe

Microbial community design: methods, applications, and opportunities

(2019) Alexander Eng et al.   CURRENT OPINION IN BIOTECHNOLOGY

Microbial indicators are better predictors of wheat yield and quality than N fertilization

(2019) Étienne Yergeau et al.   FEMS MICROBIOLOGY ECOLOGY

Leaf-derived bacterial communities adapt to the local environment

(2019) Charles Copeland et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ABC transporter genes ABC-C6 and ABC-G33 alter plant-microbe-parasite interactions in the rhizosphere

(2019) Deborah Elizabeth Cox et al.   Scientific Reports

The impact of failure: unsuccessful bacterial invasions steer the soil microbial community away from the invader’s niche

(2018) C. A. Mallon et al.   ISME Journal

Soil contamination alters the willow root and rhizosphere metatranscriptome and the root–rhizosphere interactome

(2018) Etienne Yergeau et al.   ISME Journal

Improving Crop Yield and Nutrient Use Efficiency via Biofertilization—A Global Meta-analysis

(2018) Lukas Schütz et al.   Frontiers in Plant Science

Water stress history and wheat genotype modulate rhizosphere microbial response to drought

(2018) Hamed Azarbad et al.   SOIL BIOLOGY & BIOCHEMISTRY

Root exudates drive the soil-borne legacy of aboveground pathogen infection

(2018) Jun Yuan et al.   Microbiome

Engineered integrative and conjugative elements for efficient and inducible DNA transfer to undomesticated bacteria

(2018) Jennifer A. N. Brophy et al.   Nature Microbiology

The Inherent Conflicts in Developing Soil Microbial Inoculants

(2018) Laura M. Kaminsky et al.   TRENDS IN BIOTECHNOLOGY

Carbon input by roots into the soil: Quantification of rhizodeposition from root to ecosystem scale

(2017) Johanna Pausch et al.   GLOBAL CHANGE BIOLOGY

A New Approach to Modify Plant Microbiomes and Traits by Introducing Beneficial Bacteria at Flowering into Progeny Seeds

(2017) Birgit Mitter et al.   Frontiers in Microbiology

Fungal volatile compounds induce production of the secondary metabolite Sodorifen in Serratia plymuthica PRI-2C

(2017) Ruth Schmidt et al.   Scientific Reports

Use of microRNA-encoded peptide miPEP172c to stimulate nodulation in soybean

(2016) Jean-Malo Couzigou et al.   NEW PHYTOLOGIST

Probiotic Diversity Enhances Rhizosphere Microbiome Function and Plant Disease Suppression

(2016) Jie Hu et al.   mBio

Bacterial Abilities and Adaptation Toward the Rhizosphere Colonization

(2016) Lucas D. Lopes et al.   Frontiers in Microbiology

Small RNAs — the secret agents in the plant–pathogen interactions

(2015) Arne Weiberg et al.   CURRENT OPINION IN PLANT BIOLOGY

Primary transcripts of microRNAs encode regulatory peptides

(2015) Dominique Lauressergues et al.   NATURE

miRNA-encoded peptides (miPEPs): A new tool to analyze the roles of miRNAs in plant biology

(2015) Jean-Malo Couzigou et al.   RNA Biology

Differing Courses of Genetic Evolution of Bradyrhizobium Inoculants as Revealed by Long-Term Molecular Tracing in Acacia mangium Plantations

(2014) M. M. Perrineau et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

An increasing opine carbon bias in artificial exudation systems and genetically modified plant rhizospheres leads to an increasing reshaping of bacterial populations

(2014) Samuel Mondy et al.   MOLECULAR ECOLOGY

Historical contingency in species interactions: towards niche-based predictions

(2013) Rachel L. Vannette et al.   ECOLOGY LETTERS

Linkage between bacterial and fungal rhizosphere communities in hydrocarbon-contaminated soils is related to plant phylogeny

(2013) Terrence H Bell et al.   ISME Journal

Microbial diversity determines the invasion of soil by a bacterial pathogen

(2012) J. D. van Elsas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Trade-Offs between Competition and Defense Specialists among Unicellular Planktonic Organisms: the "Killing the Winner" Hypothesis Revisited

(2010) C. Winter et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS