Change of histone H3 lysine 14 acetylation stoichiometry in human monocyte derived macrophages as determined by MS-based absolute targeted quantitative proteomic approach: HIV infection and methamphetamine exposure

HIV-1 and methamphetamine alter galectins -1, -3, and -9 in human monocyte-derived macrophages

(2022) Kinga Grabowska et al.   JOURNAL OF NEUROVIROLOGY

A large scale mass spectrometry-based histone screening for assessing epigenetic developmental toxicity

(2022) Sigrid Verhelst et al.   Scientific Reports

Integrated multi-omics reveal polycomb repressive complex 2 restricts human trophoblast induction

(2022) Dick W. Zijlmans et al.   NATURE CELL BIOLOGY

Epigenetic regulation of autophagy in gastrointestinal cancers

(2022) Saeid Ghavami et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

Methamphetamine signals transcription of IL1β and TNFα in a reactive oxygen species-dependent manner and interacts with HIV-1 Tat to decrease antioxidant defense mechanisms

(2022) Liana V. Basova et al.   Frontiers in Cellular Neuroscience

Methamphetamine induces transcriptional changes in cultured HIV-infected mature monocytes that may contribute to HIV neuropathogenesis

(2022) Vanessa Chilunda et al.   Frontiers in Immunology

Epigenetics in Tuberculosis: Immunomodulation of Host Immune Response

(2022) Avinash Khadela et al.   Vaccines

Role of the histone methyltransferases Ezh2 and Suv4-20h1/Suv4-20h2 in neurogenesis

(2022) ChristopherT Rhodes et al.   Neural Regeneration Research

SWATH‐MS and MRM: Quantification of Ras‐related proteins in HIV‐1 infected and methamphetamine‐exposed human monocyte‐derived macrophages (hMDM)

(2021) Katarzyna Macur et al.   PROTEOMICS

Macrophages, Metabolites, and Nucleosomes: Chromatin at the Intersection between Aging and Inflammation

(2021) Michael C. Church et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Analysis and Interpretation of Protein Post-Translational Modification Site Stoichiometry

(2019) Gabriela Prus et al.   TRENDS IN BIOCHEMICAL SCIENCES

Targeted proteomic assays for quantitation of proteins identified by proteogenomic analysis of ovarian cancer

(2017) Ehwang Song et al.   Scientific Data

Targeted Epigenetic Remodeling of the Cdk5 Gene in Nucleus Accumbens Regulates Cocaine- and Stress-Evoked Behavior

(2016) E. A. Heller et al.   JOURNAL OF NEUROSCIENCE

Recommendations for the Generation, Quantification, Storage, and Handling of Peptides Used for Mass Spectrometry-Based Assays

(2015) A. N. Hoofnagle et al.   CLINICAL CHEMISTRY

Identification of a Potent Inhibitor of CREB-Mediated Gene Transcription with Efficacious in Vivo Anticancer Activity

(2015) Fuchun Xie et al.   JOURNAL OF MEDICINAL CHEMISTRY

The Complex Interaction Between Methamphetamine Abuse and HIV-1 Pathogenesis

(2015) Ryan Colby Passaro et al.   Journal of Neuroimmune Pharmacology

Sequential Window Acquisition of all Theoretical Mass Spectra (SWATH) Analysis for Characterization and Quantification of Histone Post-translational Modifications

(2015) Simone Sidoli et al.   MOLECULAR & CELLULAR PROTEOMICS

Profiling post-translational modifications of histones in human monocyte-derived macrophages

(2015) Pawel Olszowy et al.   Proteome Science

Stable-isotope-labeled Histone Peptide Library for Histone Post-translational Modification and Variant Quantification by Mass Spectrometry

(2014) Shu Lin et al.   MOLECULAR & CELLULAR PROTEOMICS

Targeted Peptide Measurements in Biology and Medicine: Best Practices for Mass Spectrometry-based Assay Development Using a Fit-for-Purpose Approach

(2014) Steven A. Carr et al.   MOLECULAR & CELLULAR PROTEOMICS

Internal standards in the quantitative determination of protein biopharmaceuticals using liquid chromatography coupled to mass spectrometry

(2012) Kees J. Bronsema et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

PASSEL: The PeptideAtlas SRMexperiment library

(2012) Terry Farrah et al.   PROTEOMICS

The  -Catenin Destruction Complex

(2012) J. L. Stamos et al.   Cold Spring Harbor Perspectives in Biology

Histone H3 Lysine 14 Acetylation Is Required for Activation of a DNA Damage Checkpoint in Fission Yeast

(2011) Yu Wang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Absolute quantification of protein and post-translational modification abundance with stable isotope–labeled synthetic peptides

(2011) Arminja N Kettenbach et al.   Nature Protocols

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

(2010) Brendan MacLean et al.   BIOINFORMATICS

Epigenetic markers and their cross-talk

(2010) Stefan Winter et al.   Essays in Biochemistry

Epigenetic activation of unintegrated HIV-1 genomes by gut-associated short chain fatty acids and its implications for HIV infection

(2009) B. Kantor et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA