Online interoperable resources for building hippocampal neuron models via the Hippocampus Hub

NeuroML-DB: Sharing and characterizing data-driven neuroscience models described in NeuroML

(2023) Justas Birgiolas et al.   PLoS Computational Biology

Specific patterns of neural activity in the hippocampus after massed or distributed spatial training

(2023) Eleonora Centofante et al.   Scientific Reports

EBRAINS Live Papers - Interactive Resource Sheets for Computational Studies in Neuroscience

(2022) Shailesh Appukuttan et al.   NEUROINFORMATICS

The EBRAINS Hodgkin-Huxley Neuron Builder: An online resource for building data-driven neuron models

(2022) Luca Leonardo Bologna et al.   Frontiers in Neuroinformatics

HippoUnit: A software tool for the automated testing and systematic comparison of detailed models of hippocampal neurons based on electrophysiological data

(2021) Sára Sáray et al.   PLoS Computational Biology

The EBRAINS NeuroFeatureExtract: An Online Resource for the Extraction of Neural Activity Features From Electrophysiological Data

(2021) Luca L. Bologna et al.   Frontiers in Neuroinformatics

Data‐driven integration of hippocampal CA1 synaptic physiology in silico

(2020) András Ecker et al.   HIPPOCAMPUS

Circadian Modulation of Neurons and Astrocytes Controls Synaptic Plasticity in Hippocampal Area CA1

(2020) John P. McCauley et al.   Cell Reports

The Scientific Case for Brain Simulations

(2019) Gaute T. Einevoll et al.   NEURON

Open Source Brain: A Collaborative Resource for Visualizing, Analyzing, Simulating, and Developing Standardized Models of Neurons and Circuits

(2019) Padraig Gleeson et al.   NEURON

BRAIN Initiative: Cutting-Edge Tools and Resources for the Community

(2019) Elizabeth Litvina et al.   JOURNAL OF NEUROSCIENCE

An open repository for single-cell reconstructions of the brain forest

(2018) Masood A. Akram et al.   Scientific Data

OpenWorm: overview and recent advances in integrative biological simulation of Caenorhabditis elegans

(2018) Gopal P. Sarma et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The physiological variability of channel density in hippocampal CA1 pyramidal cells and interneurons explored using a unified data-driven modeling workflow

(2018) Rosanna Migliore et al.   PLoS Computational Biology

Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience

(2016) Robert A. McDougal et al.   JOURNAL OF COMPUTATIONAL NEUROSCIENCE

The Human Brain Project: Creating a European Research Infrastructure to Decode the Human Brain

(2016) Katrin Amunts et al.   NEURON

BluePyOpt: Leveraging Open Source Software and Cloud Infrastructure to Optimise Model Parameters in Neuroscience

(2016) Werner Van Geit et al.   Frontiers in Neuroinformatics

ModelView for ModelDB: Online Presentation of Model Structure

(2015) Robert A. McDougal et al.   NEUROINFORMATICS

Hippocampome.org: a knowledge base of neuron types in the rodent hippocampus

(2015) Diek W Wheeler et al.   eLife

OpenWorm: an open-science approach to modeling Caenorhabditis elegans

(2014) Balázs Szigeti et al.   Frontiers in Computational Neuroscience

LEMS: a language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2

(2014) Robert C. Cannon et al.   Frontiers in Neuroinformatics

The NIH BRAIN Initiative

(2013) T. R. Insel et al.   SCIENCE

NeuroML: A Language for Describing Data Driven Models of Neurons and Networks with a High Degree of Biological Detail

(2010) Padraig Gleeson et al.   PLoS Computational Biology

PyNEST: A convenient interface to the NEST simulator

(2009) Jochen M Eppler   Frontiers in Neuroinformatics

PyNN: a common interface for neuronal network simulators

(2009) Andrew P Davison   Frontiers in Neuroinformatics

Petilla terminology: nomenclature of features of GABAergic interneurons of the cerebral cortex

(2008)   NATURE REVIEWS NEUROSCIENCE

Brian: a simulator for spiking neural networks in Python

(2008) Dan Goodman   Frontiers in Neuroinformatics