NeuroML-DB: Sharing and characterizing data-driven neuroscience models described in NeuroML

SciPy 1.0: fundamental algorithms for scientific computing in Python

(2020) Pauli Virtanen et al.   NATURE METHODS

Systematic Integration of Structural and Functional Data into Multi-scale Models of Mouse Primary Visual Cortex

(2020) Yazan N. Billeh et al.   NEURON

Open Source Brain: A Collaborative Resource for Visualizing, Analyzing, Simulating, and Developing Standardized Models of Neurons and Circuits

(2019) Padraig Gleeson et al.   NEURON

Systematic generation of biophysically detailed models for diverse cortical neuron types

(2018) Nathan W. Gouwens et al.   Nature Communications

Generalized leaky integrate-and-fire models classify multiple neuron types

(2018) Corinne Teeter et al.   Nature Communications

Arkheia: Data Management and Communication for Open Computational Neuroscience

(2018) Ján Antolík et al.   Frontiers in Neuroinformatics

Geppetto: a reusable modular open platform for exploring neuroscience data and models

(2018) Matteo Cantarelli et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evolutionary algorithm optimization of biological learning parameters in a biomimetic neuroprosthesis

(2017) S. Dura-Bernal et al.   IBM JOURNAL OF RESEARCH AND DEVELOPMENT

Mapping the function of neuronal ion channels in model and experiment

(2017) William F Podlaski et al.   eLife

Adult mouse cortical cell taxonomy revealed by single cell transcriptomics

(2016) Bosiljka Tasic et al.   NATURE NEUROSCIENCE

Inferring cortical function in the mouse visual system through large-scale systems neuroscience

(2016) Michael Hawrylycz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interneuronal mechanisms of hippocampal theta oscillations in a full-scale model of the rodent CA1 circuit

(2016) Marianne J Bezaire et al.   eLife

Visualizing, editing and simulating neuronal models with the Open Source Brain 3D explorer

(2015) Adrian Quintana et al.   BMC NEUROSCIENCE

Reconstruction and Simulation of Neocortical Microcircuitry

(2015) Henry Markram et al.   CELL

Model exchange with the NeuroML model database

(2014) Sharon M Crook et al.   BMC NEUROSCIENCE

Distributed organization of a brain microcircuit analyzed by three-dimensional modeling: the olfactory bulb

(2014) Michele Migliore et al.   Frontiers in Computational Neuroscience

libNeuroML and PyLEMS: using Python to combine procedural and declarative modeling approaches in computational neuroscience

(2014) Michael Vella et al.   Frontiers in Neuroinformatics

Dendritic spikes enhance stimulus selectivity in cortical neurons in vivo

(2013) Spencer L. Smith et al.   NATURE

Experimentally constrained CA1 fast-firing parvalbumin-positive interneuron network models exhibit sharp transitions into coherent high frequency rhythms

(2013) Katie A. Ferguson et al.   Frontiers in Computational Neuroscience

NeuroLex.org: an online framework for neuroscience knowledge

(2013) Stephen D. Larson et al.   Frontiers in Neuroinformatics

A Hierarchical Structure of Cortical Interneuron Electrical Diversity Revealed by Automated Statistical Analysis

(2012) Shaul Druckmann et al.   CEREBRAL CORTEX

A bi-symmetric log transformation for wide-range data

(2012) J Beau W Webber   MEASUREMENT SCIENCE and TECHNOLOGY

Models of Neocortical Layer 5b Pyramidal Cells Capturing a Wide Range of Dendritic and Perisomatic Active Properties

(2011) Etay Hay et al.   PLoS Computational Biology

Rapid Desynchronization of an Electrically Coupled Interneuron Network with Sparse Excitatory Synaptic Input

(2010) Koen Vervaeke et al.   NEURON

NeuroML: A Language for Describing Data Driven Models of Neurons and Networks with a High Degree of Biological Detail

(2010) Padraig Gleeson et al.   PLoS Computational Biology

Multiscale modeling and interoperability in MOOSE

(2009) Niraj Dudani et al.   BMC NEUROSCIENCE

Minimal Hodgkin–Huxley type models for different classes of cortical and thalamic neurons

(2008) Martin Pospischil et al.   BIOLOGICAL CYBERNETICS

Caenorhabditis elegans body wall muscles are simple actuators

(2008) Jordan H. Boyle et al.   BIOSYSTEMS

L-Measure: a web-accessible tool for the analysis, comparison and search of digital reconstructions of neuronal morphologies

(2008) Ruggero Scorcioni et al.   Nature Protocols

Petilla terminology: nomenclature of features of GABAergic interneurons of the cerebral cortex

(2008)   NATURE REVIEWS NEUROSCIENCE

The Neuroscience Information Framework: A Data and Knowledge Environment for Neuroscience

(2008) Daniel Gardner et al.   NEUROINFORMATICS