Combining Global-Constrained Concept Factorization and a Regularized Gaussian Graphical Model for Clustering Single-Cell RNA-seq Data

A Personalized Low-Rank Subspace Clustering Method Based on Locality and Similarity Constraints for scRNA-seq Data Analysis

(2023) Tian-Jing Qiao et al.   IEEE Journal of Biomedical and Health Informatics

Predicting Heart Cell Types by Using Transcriptome Profiles and a Machine Learning Method

(2022) Shijian Ding et al.   Life-Basel

Identifying In Vitro Cultured Human Hepatocytes Markers with Machine Learning Methods Based on Single-Cell RNA-Seq Data

(2022) ZhanDong Li et al.   Frontiers in Bioengineering and Biotechnology

Identification of Cell Markers and Their Expression Patterns in Skin Based on Single-Cell RNA-Sequencing Profiles

(2022) Xianchao Zhou et al.   Life-Basel

Identification of cortical interneuron cell markers in mouse embryos based on machine learning analysis of single-cell transcriptomics

(2022) Zhandong Li et al.   Frontiers in Neuroscience

Single-cell technologies: From research to application

(2022) Lu Wen et al.   Innovation(United States)

Clustering Single-Cell RNA-Seq Data with Regularized Gaussian Graphical Model

(2021) Zhenqiu Liu   Genes

SSRE: Cell Type Detection Based on Sparse Subspace Representation and Similarity Enhancement

(2021) Zhenlan Liang et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

NMFLRR: Clustering scRNA-Seq Data by Integrating Nonnegative Matrix Factorization With Low Rank Representation

(2021) Wei Zhang et al.   IEEE Journal of Biomedical and Health Informatics

Efficient Solvers for Sparse Subspace Clustering

(2020) Farhad Pourkamali-Anaraki et al.   SIGNAL PROCESSING

Large-scale Generation of Functional and Transplantable Hepatocytes and Cholangiocytes from Human Endoderm Stem Cells

(2020) Sisi Feng et al.   Cell Reports

SCCLRR: A Robust Computational Method for Accurate Clustering Single Cell RNA-Seq Data

(2020) Wei Zhang et al.   IEEE Journal of Biomedical and Health Informatics

jSRC: a flexible and accurate joint learning algorithm for clustering of single-cell RNA-sequencing data

(2020) Wenming Wu et al.   BRIEFINGS IN BIOINFORMATICS

Concept Factorization With Local Centroids

(2020) Mulin Chen et al.   IEEE Transactions on Neural Networks and Learning Systems

Cell lineage and communication network inference via optimization for single-cell transcriptomics

(2019) Shuxiong Wang et al.   NUCLEIC ACIDS RESEARCH

SinNLRR: a robust subspace clustering method for cell type detection by non-negative and low-rank representation

(2019) Ruiqing Zheng et al.   BIOINFORMATICS

SNMFSMMA: using symmetric nonnegative matrix factorization and Kronecker regularized least squares to predict potential small molecule-microRNA association

(2019) Yan Zhao et al.   RNA Biology

Single cell clustering based on cell-pair differentiability correlation and variance analysis

(2018) Hao Jiang et al.   BIOINFORMATICS

Spectral clustering based on learning similarity matrix

(2018) Seyoung Park et al.   BIOINFORMATICS

Boosting the power of single-cell analysis

(2018) Lu Wen et al.   NATURE BIOTECHNOLOGY

Early emergence of cortical interneuron diversity in the mouse embryo

(2018) Da Mi et al.   SCIENCE

Single-Cell Transcriptional Profiling Reveals Cellular Diversity and Intercommunication in the Mouse Heart

(2018) Daniel A. Skelly et al.   Cell Reports

Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris

(2018) et al.   NATURE

Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning

(2017) Bo Wang et al.   NATURE METHODS

SC3: consensus clustering of single-cell RNA-seq data

(2017) Vladimir Yu Kiselev et al.   NATURE METHODS

Graph-Regularized Local Coordinate Concept Factorization for Image Representation

(2017) Jun Ye et al.   NEURAL PROCESSING LETTERS

Massively parallel digital transcriptional profiling of single cells

(2017) Grace X. Y. Zheng et al.   Nature Communications

Robust classification of single-cell transcriptome data by nonnegative matrix factorization

(2016) Chunxuan Shao et al.   BIOINFORMATICS

Single-Cell Transcriptomics of the Human Endocrine Pancreas

(2016) Yue J. Wang et al.   DIABETES

Convex Sparse Spectral Clustering: Single-View to Multi-View

(2016) Canyi Lu et al.   IEEE TRANSACTIONS ON IMAGE PROCESSING

Discriminative Nonnegative Matrix Factorization for dimensionality reduction

(2016) Mohammadreza Babaee et al.   NEUROCOMPUTING

Identification of cell types from single-cell transcriptomes using a novel clustering method

(2015) Chen Xu et al.   BIOINFORMATICS

Single‐cell transcriptomes reveal characteristic features of human pancreatic islet cell types

(2015) Jin Li et al.   EMBO REPORTS

Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells

(2015) Florian Buettner et al.   NATURE BIOTECHNOLOGY

Spatial reconstruction of single-cell gene expression data

(2015) Rahul Satija et al.   NATURE BIOTECHNOLOGY

A survey of human brain transcriptome diversity at the single cell level

(2015) Spyros Darmanis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deconstructing transcriptional heterogeneity in pluripotent stem cells

(2014) Roshan M. Kumar et al.   NATURE

Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq

(2014) Barbara Treutlein et al.   NATURE

Unbiased classification of sensory neuron types by large-scale single-cell RNA sequencing

(2014) Dmitry Usoskin et al.   NATURE NEUROSCIENCE

Single-Cell RNA Sequencing Identifies Extracellular Matrix Gene Expression by Pancreatic Circulating Tumor Cells

(2014) David T. Ting et al.   Cell Reports

Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells

(2013) Liying Yan et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

(2012) Daniel Ramsköld et al.   NATURE BIOTECHNOLOGY

Locally Consistent Concept Factorization for Document Clustering

(2010) Deng Cai et al.   IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

Graph Regularized Nonnegative Matrix Factorization for Data Representation

(2010) Deng Cai et al.   IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE

Fast unfolding of communities in large networks

(2008) Vincent D Blondel et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT