jSRC: a flexible and accurate joint learning algorithm for clustering of single-cell RNA-sequencing data
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Title
jSRC: a flexible and accurate joint learning algorithm for clustering of single-cell RNA-sequencing data
Authors
Keywords
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Journal
BRIEFINGS IN BIOINFORMATICS
Volume -, Issue -, Pages -
Publisher
Oxford University Press (OUP)
Online
2020-12-28
DOI
10.1093/bib/bbaa433
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Note: Only part of the references are listed.- SHARP: hyperfast and accurate processing of single-cell RNA-seq data via ensemble random projection
- (2020) Shibiao Wan et al. GENOME RESEARCH
- Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China
- (2020) Chaolin Huang et al. LANCET
- Joint learning dimension reduction and clustering of single-cell RNA-sequencing data
- (2020) Wenming Wu et al. BIOINFORMATICS
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- (2020) Mingfeng Liao et al. NATURE MEDICINE
- BREM-SC: a bayesian random effects mixture model for joint clustering single cell multi-omics data
- (2020) Xinjun Wang et al. NUCLEIC ACIDS RESEARCH
- Challenges in unsupervised clustering of single-cell RNA-seq data
- (2019) Vladimir Yu Kiselev et al. NATURE REVIEWS GENETICS
- Cell lineage and communication network inference via optimization for single-cell transcriptomics
- (2019) Shuxiong Wang et al. NUCLEIC ACIDS RESEARCH
- Association between MICA polymorphisms, s-MICA levels, and pancreatic cancer risk in a population-based case-control study
- (2019) Guillaume Onyeaghala et al. PLoS One
- Metascape provides a biologist-oriented resource for the analysis of systems-level datasets
- (2019) Yingyao Zhou et al. Nature Communications
- Synaptic proximity enables NMDAR signalling to promote brain metastasis
- (2019) Qiqun Zeng et al. NATURE
- Supervised classification enables rapid annotation of cell atlases
- (2019) Hannah A. Pliner et al. NATURE METHODS
- Probabilistic cell-type assignment of single-cell RNA-seq for tumor microenvironment profiling
- (2019) Allen W. Zhang et al. NATURE METHODS
- Latent cellular analysis robustly reveals subtle diversity in large-scale single-cell RNA-seq data
- (2019) Changde Cheng et al. NUCLEIC ACIDS RESEARCH
- Dp71 Expression in Human Glioblastoma
- (2019) Simona Ruggieri et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- SAME-clustering: Single-cell Aggregated Clustering via Mixture Model Ensemble
- (2019) Ruth Huh et al. NUCLEIC ACIDS RESEARCH
- IL-22RA1/ STAT3 signaling promotes stemness and tumorigenicity in pancreatic cancer
- (2018) Weizhi He et al. CANCER RESEARCH
- Mapping the Mouse Cell Atlas by Microwell-Seq
- (2018) Xiaoping Han et al. CELL
- Interpretable dimensionality reduction of single cell transcriptome data with deep generative models
- (2018) Jiarui Ding et al. Nature Communications
- SAFE-clustering: Single-cell Aggregated (From Ensemble) Clustering for Single-cell RNA-seq Data
- (2018) Yuchen Yang et al. BIOINFORMATICS
- Sparse Representation-Based Intuitionistic Fuzzy Clustering Approach to Find the Group Intra-Relations and Group Leaders for Large-Scale Decision Making
- (2018) Ruxi Ding et al. IEEE TRANSACTIONS ON FUZZY SYSTEMS
- A Valine Mismatch at Position 129 of MICA Is an Independent Predictor of Cytomegalovirus Infection and Acute Kidney Rejection in Simultaneous Pancreas–Kidney Transplantation Recipients
- (2018) Rafael Michita et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- The cis-regulatory dynamics of embryonic development at single-cell resolution
- (2018) Darren A. Cusanovich et al. NATURE
- CellBIC: bimodality-based top-down clustering of single-cell RNA sequencing data reveals hierarchical structure of the cell type
- (2018) Junil Kim et al. NUCLEIC ACIDS RESEARCH
- The mucinous domain of pancreatic carboxyl-ester lipase (CEL) contains core 1/core 2 O-glycans that can be modified by ABO blood group determinants
- (2018) Khadija El Jellas et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Dimensionality reduction for visualizing single-cell data using UMAP
- (2018) Etienne Becht et al. NATURE BIOTECHNOLOGY
- ECT2/PSMD14/PTTG1 axis promotes the proliferation of glioma through stabilizing E2F1
- (2018) Tongle Zhi et al. NEURO-ONCOLOGY
- Semisoft clustering of single-cell data
- (2018) Lingxue Zhu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Downregulation of miR-130a promotes cell growth and epithelial to mesenchymal transition by activating HMGB2 in glioma
- (2017) Chunhai Tang et al. INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY
- Assembly of functionally integrated human forebrain spheroids
- (2017) Fikri Birey et al. NATURE
- Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning
- (2017) Bo Wang et al. NATURE METHODS
- SC3: consensus clustering of single-cell RNA-seq data
- (2017) Vladimir Yu Kiselev et al. NATURE METHODS
- Copy number variants and VNTR length polymorphisms of the carboxyl-ester lipase (CEL) gene as risk factors in pancreatic cancer
- (2017) Monica Dalva et al. PANCREATOLOGY
- Robust continuous clustering
- (2017) Sohil Atul Shah et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Massively parallel digital transcriptional profiling of single cells
- (2017) Grace X. Y. Zheng et al. Nature Communications
- pcaReduce: hierarchical clustering of single cell transcriptional profiles
- (2016) Justina žurauskienė et al. BMC BIOINFORMATICS
- Heterogeneity in Oct4 and Sox2 Targets Biases Cell Fate in 4-Cell Mouse Embryos
- (2016) Mubeen Goolam et al. CELL
- Stability-driven nonnegative matrix factorization to interpret spatial gene expression and build local gene networks
- (2016) Siqi Wu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- mir-218-2 promotes glioblastomas growth, invasion and drug resistance by targeting CDC27
- (2016) Zhuoying Feng et al. Oncotarget
- A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure
- (2016) Maayan Baron et al. Cell Systems
- A general framework for image fusion based on multi-scale transform and sparse representation
- (2015) Yu Liu et al. Information Fusion
- Essential role of carbonic anhydrase XII in secretory gland fluid and HCO3−secretion revealed by disease causing human mutation
- (2015) Jeong Hee Hong et al. JOURNAL OF PHYSIOLOGY-LONDON
- Single-cell messenger RNA sequencing reveals rare intestinal cell types
- (2015) Dominic Grün et al. NATURE
- Spatial reconstruction of single-cell gene expression data
- (2015) Rahul Satija et al. NATURE BIOTECHNOLOGY
- A recombined allele of the lipase gene CEL and its pseudogene CELP confers susceptibility to chronic pancreatitis
- (2015) Karianne Fjeld et al. NATURE GENETICS
- Human cerebral organoids recapitulate gene expression programs of fetal neocortex development
- (2015) J. Gray Camp et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq
- (2015) A. Zeisel et al. SCIENCE
- SINCERA: A Pipeline for Single-Cell RNA-Seq Profiling Analysis
- (2015) Minzhe Guo et al. PLoS Computational Biology
- Cell fate inclination within 2-cell and 4-cell mouse embryos revealed by single-cell RNA sequencing
- (2014) Fernando H. Biase et al. GENOME RESEARCH
- Single-Cell RNA Sequencing Identifies Extracellular Matrix Gene Expression by Pancreatic Circulating Tumor Cells
- (2014) David T. Ting et al. Cell Reports
- ZFHX4 Interacts with the NuRD Core Member CHD4 and Regulates the Glioblastoma Tumor-Initiating Cell State
- (2014) Yakov Chudnovsky et al. Cell Reports
- ADAM15 is involved in MICB shedding and mediates the effects of gemcitabine on MICB shedding in PANC-1 pancreatic cancer cells
- (2013) XIAOHUI DUAN et al. Molecular Medicine Reports
- Accounting for technical noise in single-cell RNA-seq experiments
- (2013) Philip Brennecke et al. NATURE METHODS
- Robust Face Recognition via Sparse Representation
- (2009) J. Wright et al. IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE
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